Scaffold Ga0307513_10000680

Overview

Basic Information

• Taxon OID: 3300031456
• Scaffold ID: Ga0307513_10000680
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48814
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (74.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Tuberaceae → Choiromyces → Choiromyces venosus → Choiromyces venosus 120613-1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 45.9233
  • Long. (^o): -120.701

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012738	Metagenome	277	Y
F081947	Metagenome	113	Y
F102186	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307513_1000068018	F012738	N/A	MSCGRPTDQKLFAGYIRGVRVTASWGATWITPGNQLRAYFDLWVVVWLTVEGLGLTGEAARLPGPPPQSQSRVTL
Ga0307513_1000068021	F081947	GAG	MINNTTLFSPVAKPTLVGGLHGGRSGRLVNSKGIMEVTVGRRLRKAQRRMSADGSGQI
Ga0307513_100006805	F102186	GAGG	VSGGLLEAREESGSPRADSNSPGADGARNGVNKIGCGELRKEPSERARGWGTSTGYGRMQGGIRGWRSKNRGRWEEIG