Scaffold Ga0307513_10000426

Overview

Basic Information

• Taxon OID: 3300031456
• Scaffold ID: Ga0307513_10000426
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 60859
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 45.9233
  • Long. (^o): -120.701

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008927	Metagenome	325	Y
F023009	Metagenome	211	Y
F056202	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307513_1000042629	F008927	AGGAGG	MPSKWIGCIHRGQVGKRWSPREEAHRYDPEDKSCNAGRREYDMQSQVEFSTEPTNEEWPSLVQRVRLPSMSTGAR
Ga0307513_1000042643	F023009	N/A	MFGRHTQTPKDKKPLEPRPTRTTSIEEVLIPIPEVGTQKPYNQSYFCWINPENTVTLEDIAALYQYQYGKEFTYHIPAENTNSIWYTPYPEPDILSSQCFEIPALWGGNKR
Ga0307513_1000042659	F056202	GAGG	MNKRDAEKGKPQRGRRKAANHLHNSEHASEDIANSTRDAKGVLLSAI
Ga0307513_1000042662	F008927	AGGAGG	MPSKWIGCIHRGQVGKRWSPRENAYRYDPEDKTCNAGRPEYDMQLQVEFSTEPTKEDWPSSVQRVRLPSVSTRARYFVTIVVNG
Ga0307513_1000042671	F008927	AGGAGG	MPSNWIGCIHRGQVGKRWSPRENANGYDPEDKSCNARRPEYDMQLQVEFSTKPTKEDWPSSVQRVRLPSVSRTAR