Scaffold Ga0307513

Basic Information
Taxon OID	3300031456 Open in IMG/M
Scaffold ID	Ga0307513_10000196 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	87676
Total Scaffold Genes	109 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	77 (70.64%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	1

Scaffold Components

Scaffold Length (bps)

87676

Total Scaffold Genes

109 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

77 (70.64%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	45.9233	Long. (^o)	-120.701	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Washington

Coordinates

Lat. (^o)

45.9233

Long. (^o)

-120.701

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F008927	Metagenome	325	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0307513_10000196101	F008927	AGGAGG	MRSKCIGCIHKGQVSKRWSPREEAHRYDPKDKSCNAGRPENDRQSCVEFSTEPTNEKWPSSVKRIRLPSVSTGTR
Ga0307513_1000019622	F008927	AGGAGG	MPSKSIGGIHKVQVGKRWSLREKAHRECPEDKSCNAGRLEYDMRLHAKFLMKPTKEEWPSSV
Ga0307513_1000019666	F008927	AGGAGG	MPRKWIGCIHKGQVGKRWSPREEAHRYDPEDKSCNAGRPEYDMLLHGKFSTEPTNEEWPSSVQRVRPPSVSTGAR
Ga0307513_100001967	F008927	AGGAGG	MPSEWIGCIYKGQVGKRWSPRKEAHRYDPEDKSCNAGRPEYDMQSGVEFSTEPTHEECPSSVQLVRLPSMSTGSR
Ga0307513_1000019676	F008927	GAGG	MPRKWIGCIHKGQVGKRWSPREEAHRYEAEDKSCNAGRPEYDMQLHVKFSKEPTNEEWPSSVQRVRLPSVSMGTR
Ga0307513_1000019683	F008927	AGGAGG	MPSKWIGRIHEAQVRTRWSPRERSHSYDPEDKSGNAGRREYDMLSHVEFWMEPTKDEWPSSVQQVRLPSVSTGAR
Ga0307513_1000019688	F008927	AGGAGG	MPSKWIGCIHRGQVGKRWSPREEAHKYDPEDKSCNAGRPEYDVQSQVEFSTEPTNEEWPSSVQQVRLPSVSTAAR
Ga0307513_1000019699	F008927	AGGA	MPGKWIGCIHRGQVGKRWSPREEAHRYDAKDKSCNAGRPEYDMQARVEFSREPTNEEWPSSVQRVRLLSVSKGAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307513_10000196

Overview

Ecosystem & Geography

Associated Families

Sequences