Scaffold Ga0307505_10000062

Overview

Basic Information

• Taxon OID: 3300031455
• Scaffold ID: Ga0307505_10000062
• Source Dataset Name: Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 130304
• Total Scaffold Genes: 113
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (65.49%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 48.4473
  • Long. (^o): -122.323

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002279	Metagenome	575	Y
F026702	Metagenome / Metatranscriptome	197	Y
F092677	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307505_1000006219	F092677	AGG	MRFSSVFLAISILLSIACADRNAASDHTTEWREVLVHKQAAASADASPHHKQRYADSVRTFVEKHPEHSRAREVWLRLQLEFADDLTAAGRHQDAIRFYRAVLSHEPENAHAVRGLAGAVERLAVSRDRLMTLEKGMSRREVASLLGKPLPGWTVTNKRPEAEFEAWYYRTRGGGVAGVYFRDGKVFAAEETSDAKLGRMGS
Ga0307505_1000006247	F002279	GAG	MSVPSPVTPARPDWPRLVSESLKQHGVWHTHAKLMEARRAYPEDLSLRGYLEIVRNGIVRDFLAHPRGVQAVPKMSPEFLSNFERFNLNAQEGYLVSLIDGRFDIQKLMILSPFDPFTTIFILAKLQQERAIVVPQ
Ga0307505_1000006255	F026702	GAGG	MSFDLATISYPDGRVARLPPEEFYAIPLGERIELLTSSRIKFERDRVLISPLDALRKKPQ