Scaffold Ga0307505_10000016

Overview

Basic Information

• Taxon OID: 3300031455
• Scaffold ID: Ga0307505_10000016
• Source Dataset Name: Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 208931
• Total Scaffold Genes: 214
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 172 (80.37%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 48.4473
  • Long. (^o): -122.323

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006608	Metagenome	369	Y
F019386	Metagenome / Metatranscriptome	230	Y
F031978	Metagenome	181	Y
F065825	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307505_10000016148	F019386	GAGG	MRHQDKIKIQRRRRRKLFWLFAAAAVCALLLEEQVAVLYVASALAICGLMMVLAFSNLQARDEGMQTSAIREAADDDMTRYSRSLSRGKRRVA
Ga0307505_10000016183	F031978	GGAGG	VRCNSKSRISFKRRYRKFAWIFGSSAIVIALLYWEQAAVLYVLSTFAMCALLLVVMFSNLEARDKELHQTALENMDARDAESTRSASAKKRVA
Ga0307505_10000016193	F006608	GAG	MIFRMHEKEVSGTSAVDIVRTLEREDKEYRHCGGPIRQYLSWSLNRLGGSVPARDLDPSDRLEDEALALDYLLLLDEYGVGKMIGTTD
Ga0307505_10000016200	F065825	GGAGG	MAVPENQYIVLPETIDGKKQGERWSEVLRRWLVKCPRCSEVRLVVGARENDQYVCKDCGHRFTIEFSVAEKELG