Scaffold Ga0272425_1022004

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1022004
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4483
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F037508	Metagenome	167	Y
F069514	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_10220041	F069514	GAG	MIKFIDNNALFSIIFSISFFLNKDFHSCMSFELNVIKYESSCERLQTTKVENISEHMNKTLKFARESLVKTREQMMKQVNKHRKEVD
Ga0272425_10220044	F001253	GAGG	VTFIKDAMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIKPLSLIKLKSIRGFDDHYAKKLITHAIYSNLTVQDHMKRFVFMLITRLDQHQMILEKT
Ga0272425_10220045	F037508	N/A	VVFRLEGDADQQTYAKRRVDAFSPYQSLSELLKHLKEIYEDQNLIRKCRREYVALKQLNKPFSSFYSEFTRIFSFLNYDDIILMNDIQDKINNRLQNALSVCLIEFSSLDKLKTFLQDVNNKQRVNYQLRDEQ