NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1021311

Scaffold Ga0272425_1021311


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1021311 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4602
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009377Metagenome318Y
F017767Metagenome238Y
F028667Metagenome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_10213112F009377N/AMTRSTELESELVSTTCYETRNAERESLLSQNRTASEEEDMNASLNIEEENTNALLFDHEMIKISISTKLNAXISAHEADDLVAFIKYMCQQHDIEIKIHNDMIQMLNNVNKINVELKAINIELKTTQTTLNVVRTRLQKEMKKKNVIIRHLEATSSQLSTSISKDRFSKSIKLSDSSLFEDSKQNVNNXLSXMRNKLKMNKNHFSIKEMKIAYVKSRVSETMIKHIAFRMRNTITNSFLEAEEILSIINKMYDNLNXHHITQQQFLKLYQNKIFFHEFXMKFQRLSAKLDVMILVLPDLF
Ga0272425_10213113F028667GAGMLIELRDQQDMTLKLNEQXIDVQVDHIKRLDELEINQMTIDTQEETIVNLREKVLSLKKKQRSANQLQSRQSTESRVSTKSLSRQFIENHTRRKSFILFDNDHHKSFKFSNSSVFIDEDESTXNSXRVKMNDKLQTNVDHFDNENICIVYVISRLEDDAAEHIFAXRRHDASHFYISIYELFEHLKEIYDELNRNRKCRHEYNALRQAEKSFNVFYFDFMKLFSYLEYNDRTLMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIVKVTVVSDKCAATSLSVTTSIIDYVKSILSSISESARSSIICYTCKISSHLFKNCSQNKINTSASCAFILHLHKIVISKNKKNEKMSSFEDSEAKN
Ga0272425_10213114F017767N/AMKEMLISSTTSMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQI
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