Scaffold Ga0272425_1016387

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1016387
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5723
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F008115	Metagenome	338	Y
F019584	Metagenome	228	Y
F049323	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_10163871	F049323	N/A	MMKEMNEESAEQREEVLRMTXRVQQRCARFKLDIASXLALIKLIRVKSELXSIQTCS
Ga0272425_10163872	F007840	N/A	MINAIKRQNNIKEFIESTARLIELLDDLQLIKYASFISINRISDKESSLIARESNRSRELINSQIKQQK
Ga0272425_10163873	F019584	N/A	MIKARTIKQIIFVEESVKATCRIIETKMTDQSKSHDAVLTSVKENDLLIKNCFLCHKSDHTSKKCLNKSFRINILNDEFDYSLNFNSESDSKN
Ga0272425_10163877	F008115	N/A	MLXNVYXLHDLLSSIVSNRDSQFISIMXQSLCKXLKIKVNLSTVYHLKIDDQLKXANQDVECKLXIYCNYMQNDXAKXLSMMKFSDNFNTFSTILIISFYFNKDFHLRMSFDSDTTDYETTHQHIKARKINDIVTQMNKLLIFNHQQLKKIKQITEAQMNKHRRDVIYEVNDQVXLVFENIKITRSCKDLKDKQLNFYSITVKVEIFYHLQLSRSMKHIHSVFSSKCLQSSSNNSLLKQHSEFFRSMIIKE