Scaffold Ga0272425_1016173

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1016173
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5794
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003820	Metagenome	466	Y
F024448	Metagenome	205	Y
F036036	Metagenome	170	Y
F087978	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_101617310	F087978	N/A	SSKLLQSYSEDSLSEQHSESLKSITIKDNEHXKIDDILNFRRYXDQIQYKVKXKDLDRNDEXYYVDKEKFNDSEKVLNEFHKLYSSKSR
Ga0272425_10161732	F003820	N/A	MKLFNYLNYDDCTLMNDFQNKINNCLQNTLSVCSKNFTSLTRLRIFLQDVNNKQQVNYQLRSQLCTVIIKVTIIFDKCIATSLSAVMISIIKYVKSIIFSIFESVRSSIVCYICKISDHLFKNCFQNKISILTSCAFTLHLNTXNHHFKE
Ga0272425_10161733	F024448	N/A	MSMSDDSFTSESLIIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVYDQLQIKFLTLIKAKSIQEFDDHYAKKFIIYVIYSNLTVQNHTIDTASMLITXLNQHQMILEKTXMNKINLVIDMQINSLQFLNFNSTSQKLIALFSSNKSITKRKSLTFTHILKRFFTFVIS
Ga0272425_10161738	F036036	N/A	MLVSLIHHLLSCFDQSFASKDQCFIHVIEYIFDSSNLQTFANAFILDDVRIEAHMRMKVLVHEEESQEDDXKQDVIVDKLNHE