Scaffold Ga0272425_1012674

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1012674
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7147
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007459	Metagenome	350	Y
F010658	Metagenome	300	Y
F015552	Metagenome	253	Y
F020636	Metagenome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_10126743	F020636	N/A	MFRQNFKNNLKNEIMCNKRIFNDIFDFIEVVINLDDKLYEKTIKKIYN
Ga0272425_10126744	F010658	N/A	MIDSSATSNFIIRAFIKREEYSTLKKSNAYNLIIIDENLLFNENEKVNKETKLLSIAI
Ga0272425_10126745	F007459	N/A	MYFSCFAMNFSLHAIIYKYLISLLTITSIELYLSLIAKFVDFENLIIKFIVTLSYNDLDN
Ga0272425_10126746	F015552	N/A	MTQLALNTKVLNITKITLFFVNYSKKLNLFKKERTHLSTQSIIERVTTLKKIYDNILKMQKRLIKY