NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1012256

Scaffold Ga0272425_1012256


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1012256 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7369
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008169Metagenome337Y
F028367Metagenome191Y
F039410Metagenome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_10122562F028367N/AVLXSIYQNQCSEQXIQSFQIRFXFKFRFKKLVISSKVIKKIEIISLCKLDEILPEENYFEKSFLIDAHLILQNQFFSLCSLIDSDSVIHMLIHANLVNKVCKKLEIQSILLIKEKLIKDYDEKIFKKIITHKILLNLIIKSHKKLTVSMLIADINHHEVILSKLXMNKNEILLNMXNDVIVFSNQLNTSISIFSILLNSKHSS
Ga0272425_10122564F008169N/AMILNRETDQLNELSKQXDDKIKKLKTRLQTKEITSSDFIYFERSRSQKIPDSFXFTDEKNSTXENXYNKIQNKLKINVDLFSNKXVKLSYVHFRLFNDAADVAQSKCKRDCVNLYKIINDLLKELAELFNDSDKKVNFHKEYYNLIQESKKFSEFYTQFQXLSFYLKYHEKQLIIDLKDKINSRLQFVXIDQLVQSDSLKEIHFYLIHLNNDQRVIQEIKNKVNLIKCVNDLSKIIFHKAVVTQSINHSKSDHLKSCDAILTNVKEADVLVEICFICHKSDHSFKECSDQPTRINAVNNEYDCFEFNFNSNFDSKN
Ga0272425_10122565F039410N/ALYAIFLLMSVMNKAKTSVXFFFEQFNNVLNKAAFMLQIENDSFLIIVETDHLSIIKVLVXMIKESEVDRDQLKCFELRRIEKIEIEVFNXFEKTMTSFHIFNNISFLFIQSLLNMTSXXLISAISIDTVNFLXLLMMRLNRILXMMIFLNIFSS
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