Scaffold Ga0272425_1006654

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1006654
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13105
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004755	Metagenome	424	Y
F011463	Metagenome	290	Y
F028367	Metagenome	191	Y
F046102	Metagenome	151	Y
F068292	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100665410	F004755	N/A	LSYIHSRLFDDAAEVTQTRCKHDCVNLYKIIKDLLKELAQLFNDSNKKVNFHRKYYNLIQESKKFSKFYTQFQQLSFYLDYHEKQLIINLKDKIHFHLXFIXVDQLVQSDSLKEIRFYLIHLNNDQRVIXKIKNKLKHVNNVSKTIFHRATVIIQSINHLKSNQSKSRDAILTSIKKADVLIEICFIYHKSDHSFKECLN
Ga0272425_100665411	F028367	N/A	LFLIDAHLISQKXSFSLHFLINSDSIIYMIIHFNLVDKVCEKLRIQFISLTKEKLIKDYDEKIFKKTITHKILLNLIIESHKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMQNDVIVFSNQLNTSISIFSISLNFKHSSXSRSTSLSSITQTKIFMMLK
Ga0272425_100665412	F011463	N/A	LKKTKLIIEAQINKHKXDVIYKISDQIXLSFRNVKIMKSCKNLKDKQLDFYSIIIKVKTFYHLHLFTSMKHIHLMFSLKLLRLYSENSLSEQHSESLRSITIKDNEHXKIDDILNFRCYRDRIQYKVKXKDLDRNNKXYYVNKEKFNDSKKVLNEFHKLYLSISR
Ga0272425_10066546	F068292	N/A	MLRQNTQSAEQQVNQKEVHFQXKSSTLSDNENNHHKFIKLSNSLIFIETDDSIXKIXNIKITDKLDVNANHYSTEKIHIVYMIFRLKDDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYKDQNLIXKYHHEYITLKQLNKSFNSFYLKFTKIFNFLNYNNIILMNNI
Ga0272425_10066547	F046102	N/A	LSQXNHHVKRREEIIYREIEEXDKKLVTFIKNAMKNVLISSTMSSLNDFFALKSLTIECILSNNEINYSLKSLIDIEAADYSFIDELIMQNVCNHLQIESLSLIKLKLIRKFDDHYAKKLIIHAIYSNLTVQNHMKCFIFMLITQLDQHQMILEKTXINKIEITIDMKDDCLQFSSFKTHIKAFIKVHLTVLLSKKIAIKQKSLIFI