Scaffold Ga0272425_1005301

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1005301
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16146
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F003820	Metagenome	466	Y
F017767	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100530113	F003820	N/A	MKLFSYLDYNDCILMNDLQNKINNCLQNALSVCTKNFTLLICLKIFLQDVNNKQQVNYQLHSQLCTVIVKVTVVSDKCAATSLSAVMTSIIKYIKSTIFSISESVRSSIICYICKISDHLFKNCSQNKINISTSYAFTSRLHEIIISKNKENEKMSSFEDNEAKN
Ga0272425_100530114	F017767	N/A	MSMSDDSFASESLITECVLSSNEISYSLKSLIDIEAADYSFINEVIAQIVCD
Ga0272425_10053012	F002432	N/A	MQNDXVKXISMMKFSDNFNIFSITSMIFFYFNKEFHSXMSFDSDTTDYKTTHERLEARKADDIVIXMKELLSFDRQQLKKTKLIIEVQINKHRRDVTYEVDNXIXLSFRNIKTTRLCKDLKDKQLNLYQITAKINIFYHLHLSVSMKHLHSIFSSKLLRSYSEDSLSEQHSESFRSITIEDDEHXEIDDILNFRRYRGRIQYKVKXKDLDRNDKXYYVDKEKFDDSEKVLNEFHELYSSKSR