Scaffold Ga0272425_1004265

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1004265
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19350
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021026	Metagenome	220	Y
F038009	Metagenome	166	Y
F080690	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100426514	F038009	GAG	MIKASSSQLNYVKLYKRLIELICLKNNRSFKEKRILTLNFXXIFFLNDLKNTTRSFLFQTRNKTEXDLFLMNELRVSXLFMSEREIILLLMSRRETELLLASELRTELLLVSKLKTELLLSSKXETRLLLASKLKTELLLSNEXETKLLLASKLSVELLLVNNL
Ga0272425_100426515	F021026	N/A	MIVFCILRQAQSRVLTLALIDSEVFAYVFMNKFFTQQHHLFLHHLIHSYKLQEFNDQVTLIDDITHVIEITMILNEHIERLFFYVIELSQYLIIMSLSXLHHHVIDVNFEHNILILSFFFCLNHCCSFLVKIYDFNQQEENFSFKVNKVTFFQSRS
Ga0272425_100426517	F080690	N/A	MKSSHNFLINDERAVEQFTQSMIENSVEIFRAMQKLQNQVXQHDVIILFSFIILISSIYIKLNSQFLATITQTVAQILNNQSLLVVHLFANSVAVFIASKFKKLFDISEYERNKDQLNAXEQSLIQRMNMNDDHYFFHRVKIIYVESRLIIDKKTHNLMSQYRVNDLCIIFIFADXQYKLHHCCNNSFKTEDAHLYFRETLKQDINSFVDYYNLFYQKKKHSLMKDFSLIDYLKRNVNYF