Scaffold Ga0272425_1004115

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1004115
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19979
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (23.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008169	Metagenome	337	Y
F009377	Metagenome	318	Y
F057010	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100411512	F009377	AGAAG	MNVSSDTEEENTNVLLFDHEIIKISISTELNAXISAHEADDIIAFIKYMYQQHDIEIKTHNDMIQMLEDVNETNIMLKATQTCLQKKMRDKNVIIHHLETASSRQSTSISEDHFLKLIKLLDSFLFEDSTQNVNNXLSXMXNKLKTNKNHFSIKELKIAYIESXVDETAIKHIATXMRNTITNSFLEAEEILSIINKMYDNLNHHHMTQRQYLKLYQNKIFFHEFXMKF
Ga0272425_100411519	F057010	N/A	MIDAIERQNNTRRFIKSTARLIELLDDLQLIKYASFLSINRISDKESSLIARESNRSRESINLQIKQQKXFHLLLSSIALRSISFLLKHSFNSISFFFFIMSRFFKERFEASFFIVEDNDSFAEIITPSMTMKAMTMKALKKRCEELKARLQAREITSSSSIYSEHSRFQKILDSSLFTDEKNSTXKNWYEKVQNKLKINVDLFSSERVKLSYVHFRLFDDAAEITQSRRERDCFNSYKIVDELLKELAQLFDDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQXLFFYLDYQEKQLIIDLKNKINLRLQFTXITQLIQLSTLKEIRFYLIRLNNDQRAIREIKNREAMIKARTTKQIIFVEESVKATCRIIETKMIDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECSNRSFRINALNDEFDHSSNFDSESDSKN
Ga0272425_10041153	F008169	GAG	MKQTSENKLFNLIKRIDDKESSXIAXESFKNSQIKNILLINNILSXKLNTXSYIFINTVKHRHSLDFVLSSNFIMSKHSFIEECFKEFXSCFSQISETDSSKFFSVESFINEDDKSFAETVILSVSIENXKTXCMILDRETDQLNELSNQQDVEIKELKIKLQTKEITSSDFIYFERSRSQKISDSLXFTDEKNSTXENXYDKIQNKLEINVNLFSNKXVKLSYVHFRLFNDAAYVTQSRCKHDCVNLYKIIDDLLKELAKLFNDSDKKVNFCKEYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIVDLKDKINSRLXFIXINQLVQSNFLKEIRFYLIHLNNDQRVIXEIKNKVNLIKCINDLSKIIFHKAVVTQSVNHSKSDHLKSCDAILTSIKEADVLVEICFICHKSNHSSRECSDXSTRINAVNNKYNRFEFDFDSNFDLKN