Scaffold Ga0272425

Basic Information
Taxon OID	3300031453 Open in IMG/M
Scaffold ID	Ga0272425_1003851 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031453 Open in IMG/M

Scaffold ID

Ga0272425_1003851 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21167
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (26.09%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

21167

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (26.09%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.8	Long. (^o)	159.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.8

Long. (^o)

159.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004755	Metagenome	424	Y
F008115	Metagenome	338	Y
F028368	Metagenome	191	Y
F048017	Metagenome	148	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100385118	F008115	N/A	MLXNVYXLHDLFSSIVSNRDSQFISTMXKSLCKXLRITASLFIVYHFEINDQLKQVNQDVERKLRIYCNNMQNDXIKXISMMKFNDNFNIFLITSIIFFYFNKEFHSXMSFDSNTTDYKTTHERLKARKADDIVIXMKELLSFDHQQLKKTKLIIEVQINKHRXNITYEVDDXVXLSFRNVKTMRLCKDLKDKQLDLYQITAKVSIFYQLCLSVSMKHLHSMFSSKLLXLYSEDSLSEQHSESLRLITIKDDEHXKIDNILNFRRYXDQIQYKVKXKDLDRNNEXYYVDKEKFNNSEKVLNEFHKLYSSKSR
Ga0272425_100385119	F048017	N/A	MFIDHQTLKIFMKNKQLSQQQVNYLNILLKFNFQIIFRSDKINTKVDALIRMSLTNVSESAQRFKDHFQTILTLNKVNVLSIELKANLYQQVCIINQINEFCSEYKQAMNDNKLRFHITKLKNCKIIDDVLFRKDLL
Ga0272425_100385121	F028368	AGAAG	LCKLDEILSKENYFEKLFLIDAHFISQNXSFNLRSLIDSDLVIYIIIHFNLVNKVCKKLKIQSISLTKKKLIRDYDEKIFKKTITHKILFNLIIESHKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMXNNVIVFSNQLNTFISIFSILLNSKHSSXSXSTSFSSFIQTKISTMLKRLISIIARKESFSIQSINIASFKRRLNCSKKNKIKVFALFMININRKIAYNTQCDLNALNISLINKTTQNLKDIKAKLFLKYHKFLNVFDXVLRAYQDXTRLKL
Ga0272425_100385122	F004755	N/A	LKELAQLFNDLNKKVNFRKEYYNLIQESKKFSEFYTQFQRLSFYLDYHEKQLIIDLKDKIHSCLXFIXVDQLVQSDSLKEIRFYLIHLNNNQXVIQEIKNKIKRVNDISKTIFHRTTVITQQSFNHSKSDYLKSCDAILTNVKEADILVESCFICHKSDHSFKECFNXPTRTNAVNKKYDRFDFNSNFDSKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272425_1003851

Overview

Ecosystem & Geography

Associated Families

Sequences