NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1003487

Scaffold Ga0272425_1003487


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1003487 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23181
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018839Metagenome232Y
F023763Metagenome208Y
F038009Metagenome166Y
F061399Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100348715F038009GAGMIKASNSQLNYVKLYRKSIELICLKNNRSFKEERILTLDSXXVFFLNDLKNTTRSFLFQMRDKIEXSLFLVNKLSISXLLVSERKIILLLVSRXETKLLLASELRIELLLASELKTELLLSSEXETRLLLASELKTELLLSSE
Ga0272425_100348716F023763N/AMSFQNCLMLILMSRIECISLLKEIFXVTCQSIXFIIDLAEAICDVIVESRQKLTSTSLMMTQLFSXHKILKIFVIYDHLNRTDKVFKLXASFFKCMNNNHEFFIVNLVVTLNXVMFLEKVSDXMKNFVLIVLKENVFEHIVQSIDFYHNLVIXIIVMKNNFENEDFLMNVECNLTFLSSDKEYIFSDETSERDSYSTIVIDESFIKVRKI
Ga0272425_100348718F061399N/AMNYVNSLSFSIFMNITYKYVLVFVDHLIKMRHLVLITSMKVEEAINCFYAHVXKHHDLLKFFMSDRDTQFIFNVXKHMCKMLKIDAKLSMMYYSKINDQIKRINAVMKHYLXVFINYMQNDXAKXLSEVEFVVNNASSLITLASFFLINLSQNSHLDFKLSESLFKNLTFQAXNKLINVKEFIKKMKKLIEHLRDEMLIAQIIYEFHVNLSCCSCFKYFIKDEVXLNARNLSIARFTVKLDDHNVDFFKIKHVFKNNYLVIELNLSIFMKIYSIFHVILLNHITNDFLSS
Ga0272425_100348723F018839N/AMMIAKVVTFNHLTSDLYAAVSIIAMFIELKDEAKLIELHDFMILLKKDDFSLS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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