Scaffold Ga0272425_1003307

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1003307
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24162
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (22.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F032884	Metagenome	178	Y
F048018	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100330715	F048018	GAG	MIRRHSLSELSTYFLSXKYRXFSCSLHSTKKILLXCCALLQSALIIXTANLSLISIYFHNVXVRVSAESSSRFRVSXSSXNLMFSTLNSSISKFMRTRICKNAKITENRCNXTEFRAMICDXSFMTLMLKMLRTRFLTILKFKTXVFRIVXCXY
Ga0272425_100330718	F009580	AGCAG	MIEVRMKRLKLVDKMICIQISERDLAQKLDFSRRQRAFFIYIDNITVINIYDMQSEELFIXTFFSNFAXMLQFAVVAQLSLVADFLDLRNDQSLILNDDNDKT
Ga0272425_100330719	F001951	N/A	MTMTKLRFIDSSRDERKRDEDIVETTVTKMMILKFKELLINAEILLTLMNETRTKTK
Ga0272425_100330721	F032884	GAG	MTIRNERVEREECEETKKNESTMTRIEXERLYVQTIDVIDQREDIKQRLXSDYM