Scaffold Ga0272425_1003276

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1003276
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24325
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (14.29%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F008735	Metagenome	328	Y
F024448	Metagenome	205	Y
F051591	Metagenome	143	Y
F061399	Metagenome	131	Y
F074204	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100327611	F074204	N/A	MIVFCILRQAQSKVSALALIDSNISAYVFMNKSFAQQHCLFLHLLTHSCRLQEFDDQVALIDDITHVVKFTMILDEHVERLFFYVTELNQYLIIMSLS
Ga0272425_100327615	F061399	N/A	LCSLSIFERRXRDVFMNYVNSLSLSIFMSITYKYVLVFVNYFSKMRHLVFIISMKVEEAINSFYAHVXKHHDLLEFFVSDQDTQFIFDVXKHMCKMLKINVKLFTAYHFKINNQIKRFNAIMKHYFRVYVNYMQDDXAKXLFKIEFAINNASLSITLAFFFLINMSQNSCLDFKLLESLSENFMSQAQDKLINVKEFIKKMKELTDHLCDEMLIAQVIYEFNVNLSRRSCSRYFVEDEVXLNACNLSITHFIVKLNDHNVELFKIKHVFEQNSLIIKLNLSTFMKVHSVFHATFLSHIANNLLSSQRQKSXELVIIENDERFXYVNSILNFKRDRHYNSSLLKYYVDXENHFSTXKSFNLLDNYE
Ga0272425_10032762	F051591	N/A	MLDAIALYFRYRSSRVTSLRIVTTDLDLLPCASRKGKTDSDLIRNALLLXNNVVSCATFGRKEVRFRFLRQYAVFCVVLKSLDDLFFSCEFAFRFINQITVXIDDSFFCVDELSFRRRFWPAXARKILIFDFXLATQSPVKLLSRMRACFDRTIVLYNLSIDLVYHMLR
Ga0272425_100327620	F024448	GAG	VTFIKDTMKDVLISSTTSMSNDSFTSESLTIEYVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIQEFNDYYAKKLITHVIYLNLTIQDHTVNIASMLITQLEQHQMILGKTXMNKTDLVIDMQINFLQFSNFNSRLTVLFSSERTMIKQKSLTSTHILKRSFSSAVT
Ga0272425_100327621	F002432	N/A	MXQSFCKQLRITTSLSTVYHSEINDQSEXVNQDIECKLKIYCNYLQNNXAKXLSMMKFSENFNIFFVISMISFYFNKDFHSRMSFNSDTTDYEITRERLEARKVDDIVIQMKKLLIFDHQQLEKTKQITEDQINKHRRDVIYKINDXVXLSFKNVKTTRLCKNLKDKQLEFYQIMIKVEIFYHLHLSVSMKQLHSMFSLKLLHSYFDDFLSEQHSESFRSLTIEDNKYXKINDILNFRCYRDRIQYKIKXTKLDRNNE
Ga0272425_10032769	F008735	N/A	MNLLIYDESXLDIDYLDSMREIMIIVYVHALYQTLLSDIQMIFVSLILRYVEKLFESNEDXDSNRICRNLNDEERLIVQSLYDDLSYRCKRLKIQFLINXRIKSDEXRXNDDIMLLNLILKLAHCAKDFNXVFNHTLSELFNSTLVLDXKTMRLLHLSKKITKQDFNIXKRCKKCKSFIMSETELD