Scaffold Ga0272425_1003244

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1003244
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24582
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006206	Metagenome	378	Y
F037509	Metagenome	167	Y
F044226	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100324411	F006206	GAG	LCKLDEILSKENYFEKLFLIDAHLISQNRSFSLHSLIDSDSVIYMIIHSDLVDKVCEKLKIQPISLIKEKLIRDYDEKISKKIITHKILLNLIIESHKKLTVSMLIADINHHEVILSKL
Ga0272425_10032448	F037509	N/A	MILISIFIQIHSADNEISIKKFVYLMINDIERQNNIKKSIESTRTYDHVIAREFIAQSVASVQID
Ga0272425_10032449	F044226	GAG	MMKFSDNFNIFSFTSMTFFYFNKEFHPRMSFDSDTTDYETTCERLEVKKADDIVI