Scaffold Ga0272425_1003212

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1003212
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24738
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (37.50%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F028368	Metagenome	191	Y
F036994	Metagenome	168	Y
F061401	Metagenome	131	Y
F074203	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100321210	F036994	N/A	MXNRMIIEADSLVDLLIEKIDYRLVIEADSLVAHEREVDRFTDR
Ga0272425_100321213	F028368	GAG	LCKLNKILLKENYFEKSFLIDTHLIFQNRSFSLRLLIDSDSVVYTIIHSNLVDKVCEKLKIQPISLTKEKLIRDYDEKISKKIITHKILLNLIIESHKKLTVSMLIVDINHHEVILSKLXMNKNEILLNMXNDVIVFSNQLNTFISIFSILFNSKHSSXLQSTSSSSITQTKIFMMLKXLVRKESFSIQSIDAASFKTLLNHSKKNKIEVFALFMMNINRKIAYNTQNDLNALNVSSINEMTQNLKDIKAKLSSKYHEFLDVFDRAQLNKLSSHRFYDHKIELISDSTSSHCRVYQMFSVKLLKVKKYLNENLSKKFITSS
Ga0272425_100321214	F074203	N/A	MSSHSLIEERFEEFRNRFSQISDADSSKSRTKSSSAASFIHEDDESFAKTIIFFVFYKIXKAXSLVLDEETDQLYELDKQQEDEIKELKTRLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNFTXKNXYGKIQNKLEINVDLFSNERVKLSYIHSRLFDDAAEITQAKRERDCVNLYKIIDNLLKELAQLFNDSNKKVNFRRKYYNLI
Ga0272425_100321215	F002432	N/A	MKFSDNFNIFSIISMISFYFNKEFHSRMSFDSDTTDYETTYEQLEARKADDIVIQMKELLSFNRQQLKKMKLIIEVQINKHRQNIIYEVNDXVXLSFRNVKTTRLCKDLKDKQLELYQITVKARVFYHLRLSVSMKHLHLMFSLKLLRSYSEDSLSEQHAESLRLIIINDDDDEHXKIDDILNFRRYQDQIQYKVKXKDLDRDNEXYYVDKDEFNDFEKVLNEFYALYSRKSR
Ga0272425_100321220	F028368	GAG	LCKLDEILSEENYFEKSFLIDVFLNSQNQSFSLHSLIDSDSVTHMLIHANLVNKVCKKLEIQSISLTKEKLIRDYDEKIFKKIIIYKILLNLIIESHKKLTVSMLIADINHHEVILSKLXMNKNEILLNMQNDIIVFSNQLNTSISIFLISLNSKHSSXSXSTSLSSIIQTKISIMLKQSVSTMTKKESFLIXSINAALFKTLLNXSKKNQTEVFALFMTDIDREIAYNTQCDLNVLNVSSINETTQNLKDIKVKLSSKYHEFLDVFDXTQSNKLLSHHFYDHKIELISDSTLSRCQVYXMFSVKLLKVKKYLNKNLSKKFITSS
Ga0272425_100321221	F061401	N/A	LNNDQQVIQEIKNKVNLIKCIDDLLKIIFHKAVVTQSVNHSKSDHLKSRNAILTNVKKADVLVETCFICHKSDHSSRECFDRPTRINAVNNEYDCFEFDFDSNFDSKN
Ga0272425_100321223	F036994	AGCAG	MXDRMIIEAGSLVDLLIEEIDYRLVIEADSLVAREHEVDXFTDR