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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031453 Open in IMG/M |
| Scaffold ID | Ga0272425_1003012 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 26013 |
| Total Scaffold Genes | 37 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (5.41%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.8 | Long. (o) | 159.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004755 | Metagenome | 424 | Y |
| F018839 | Metagenome | 232 | Y |
| F024448 | Metagenome | 205 | Y |
| F033264 | Metagenome | 177 | N |
| F086377 | Metagenome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272425_10030121 | F024448 | N/A | MKDVLISSTISISDDSFASESLTTECVLSSNEISYSLKSLINIEAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIQEFNDHYAKKLITHVIYSNLTVQDHTINTASMLITQLDQHQMILKKTXMNKINLVIDMQIDFLRFSNFTLNLKSIVLLTSNKTITKQKSLTSTHILKRSFTISQLSLKSLSFSQFNEKSVKLIEQLKS |
| Ga0272425_100301212 | F004755 | N/A | LKELAQLFNDLNKKVSFRRKYYNLVQEFKKFSEFYTQFQRLSFYLDYYKKQLIADLKDKIHSRLRFIXVDQLVQPDSLKEIRFYLIHLNNDQRVIRKIKNKIKRVDDLSKTIFHRATVITQSVDHSKSDQLKSRDAILTSVKEADILVESCFICHKSDHSSKECLDRPTRINAVNNEYDCFDFDSNFDSKN |
| Ga0272425_100301224 | F086377 | N/A | MIQRFXDQRQRILIFDDDSVQISIVHAEAKFFFKFLDEENRDDRLKVTDLNEFFAQILI |
| Ga0272425_10030125 | F018839 | N/A | MMIAKVVTFNHLTSDLYAAVSIIAMFIELKDEAKLTELNDFMILLNENNFSLS |
| Ga0272425_10030127 | F033264 | N/A | LIDIEATDYSFIDELIAQNVCNYLQIKSLSLIKLKSIKEFDDHYVKKLITHAIYLNLTVQDHMKRFVFMLITRLDQHQMILEKT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |