Scaffold Ga0272425_1002812

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1002812
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27567
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F038008	Metagenome	166	Y
F064254	Metagenome	128	Y
F075494	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100281210	F002432	N/A	MKFSDNFNIFSIISMISFYFNKGFHPRMSFDSDTTDYEITRERLKARKADDIVIQMKELLSFDRQQLKKTKLIIKAQINKHRRDVIYEIGDXVXLFFRNVKITRSCKDLKDKQLESYQITVKAKIFYHLRLSVSMKHLHSMFSSKLLRSYSEDFLPEQHAESLRLIIIDDDDDEHXKINDILNFRRYQGRIQYKVKXKDLDKDDEXYYVDKDEFDDFEKVLNEFHMLYSRKSR
Ga0272425_100281220	F075494	N/A	VINNVEKTFVHSVSERRYSVNHVESMLSDEIYCTQVINEVEKMSVHNVSENTSTCSTMHVRSMLLKIMILAVQKMHLDEVHFLRNRISRSESENLRRHDDETSTHKDCNVAEKQLNSVAETVDCKQLISHAIVKVLTIHEITYNFSNKFIVKLIKILQQENEFAVRLKADETTSI
Ga0272425_10028124	F038008	N/A	MNXSHFYTVIFXSESLKIVIVANKKMSIRQHNFDIFMLKQRVYLNDSDSRNNVTVIAMKINXELNKRLKRLTLIITHHDELKELVAKIKHLADVATANQEYHEKIYKIYSDNQIFLKTVKVMTLIKNQTRLXQVQTAHENIQS
Ga0272425_10028125	F064254	N/A	MSXFNRCYKNVXIYYYYXFFNDITAXNXFSMLIESIIXMIIIAVLTISKNFLKFVMFFFHCIAFHSTFYLKHVNRMCLIDIXSLLHLHIIIATSSTHLSCRNXLKSIFLMCSCVNNALXDFAXLLCKRRCXXVISDVRYXKXAVLNLFLQTTFHVYLICFCMSISHVIISVRXCLINNKDNSYALLIILSAASFSSTFACFVTQCNFSVTS