Scaffold Ga0272425_1002742

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1002742
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28183
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (21.21%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010214	Metagenome	306	Y
F032884	Metagenome	178	Y
F036035	Metagenome	170	Y
F041516	Metagenome	159	Y
F083460	Metagenome	112	Y
F094622	Metagenome	105	Y
F104135	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100274210	F094622	N/A	LKQKVYLNDSDSRNDVTAIAMRMNXELNKRLRRLTLIIIHHDELKELVAKAKHLADVTTANQECHEKTYKVYNDNQTSLKTVKVMISTKDQTRLQ
Ga0272425_100274211	F094622	N/A	MFALKQKVYSNDSDSKDNVTAIAMRMNXKLNKRLRELTLIITHHNELKELVARAKHLADVVTANQECHEKIYKVYSDSQTFLKTVKVMILTKDQTCLQQVQIAHESIQS
Ga0272425_100274213	F036035	N/A	MKDDAMQREHHELEKASRNHECDDSNHLNDILDKHTELILDCDIIEKSNERKRK
Ga0272425_100274217	F010214	GAG	MRVSVLFDYDTSSLLCSSLMIFYTMMFRFNSXFEDERCFLCTHNAHDCNICKAVFFYSIIIIHXAEKYVMKERCTRXEDRVXLYXVTFFFFXFDLCHVDVEXIVSIDMQSQSFDVXLXSMKENVFXSFSXALNFSCE
Ga0272425_100274218	F041516	N/A	MRKSSNNIHEAYNSSLRDHKIIHEKENLSNIEKMLHMTKENILVKDFNLHHFT
Ga0272425_10027423	F010214	GAG	MRVSVLFDYDASSLLCSSLTIFYTTMSXFDFRFEDERRFLCTRDARDCNVRRAVFSYSMIVIHXAEKYVMKERRTRXKDRVXLYXVILFFFXFDLCHVDVEXTVSIDVRLQSFDVXLXSMKENAFXLFSXALDFPHE
Ga0272425_100274230	F083460	GAG	MQLRMKSSNSQAYFDALLELNTSLNEYAMRRXLHKLLNHRLNHEESQDNSKNDDENEAAKAV
Ga0272425_100274232	F032884	GAG	MTIRIERVEREECERTKENGSTMARVEKERLYAQTIDVIDQRKDIKQRLWPGYM
Ga0272425_10027424	F104135	N/A	MFVVYLSTLKHQLSLYSNEYKXTHLFIKLKSELRMIITNVQSISMTXNALINLVAQLKINLQKEYFLLLKQSQDRDLYDQTKINKKTYFRQKKSHKLIKLNTLFKLSFNTLMCYNKDLLKIMCXICNRKNHYAINCKDEKIKNKSKEFDVNQVFIDSMLHMNHLKISRKNKLLMNTSNHXGKNKKFSL