Scaffold Ga0272425_1002721

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1002721
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28320
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (13.79%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F002432	Metagenome	559	Y
F055318	Metagenome	138	Y
F057010	Metagenome	136	N
F061402	Metagenome	131	Y
F065269	Metagenome	127	Y
F069514	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_10027211	F002432	N/A	MTSFYFNKEFHFRMSFDSDTTDYETTCERLEARKADDIAIXMKELLSFDRQQLKKTKLIIEVQINKHRRNVIYEVDDXVXLSFRNVKTTRLCKDLKDKQLESYQITVKAKIFYHLHLPVSMKHLHSMFSSKLLQSYSEDSLSEQHAESLKLIIIDDDDDEHXKVDDILNFRCYQGXIQYKVKXKDLDKDNEXYYVDKDEFDDFEKVLNEFHALYSRKSR
Ga0272425_100272113	F065269	N/A	MTRSTELESESVSIAHYKLXNAERESLLSQNXTASEEENTNALLNTEEENMNTLLFNHKMIKISISTELNA
Ga0272425_100272123	F000597	N/A	MKEMLISSMTSMSNDSFASESLITECVLSSNEISYSLKSLINIEAADYSFIDKVIAQIVYDQLQIKSLTLIKAKSIREFDDHYAKKLITYAIYLNLTVQDHTIDTASMLITQLDQH
Ga0272425_100272126	F069514	N/A	MQNDXAKLLLMIEFIDNNALFSVIFLISFFLNKDFHSHMSFELNVIEYESSCERLQMTKVENISEYMNKTLKFACELLVKTQE
Ga0272425_100272128	F057010	N/A	MIDAIERQNNIKESIESTARLVELLDDLQLIKYTSFISINRISDKEPSLIARESNRSRESINSQIKQQKXLHLLLSSIVLRSISFLLKHSFNSISSSFFIMSHLFKERFKASFFIVEDNDSFAEIITSSMTMKTMTMKALKKRCEELKARLQAREITSSSSIYSERSRFQKIFNSSLFTDEKNSIXKNXYEKVQNKLKINVDLFSSERVKLSYVHFRLFNDAAEIIQSKRERDCFNSYKIVDELLKELAQLFDDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIVDLKNKINLRLRFAXITQLIQLSTLKEIRFYLIQLNNDQRAIXEIKNKEAMIKARTIKQIIFVEESVKAIRRIIETKMTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTFKECLNRSFRINALNDKFDHSSNFNSESDSKN
Ga0272425_10027213	F055318	GAG	LNDIEALRDDEALCVNRVQSFRNCTDFDNLNAYATSNLHADEKVK
Ga0272425_10027216	F061402	N/A	MQDDXFIXLFMIEFINNNAILSSIEQSMFFLNKSFHSYMSFDSNSIEYEITQARIEADKAKNIFEHMK