Scaffold Ga0272425

Basic Information
Taxon OID	3300031453 Open in IMG/M
Scaffold ID	Ga0272425_1002719 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031453 Open in IMG/M

Scaffold ID

Ga0272425_1002719 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28333
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (24.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

28333

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (24.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.8	Long. (^o)	159.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.8

Long. (^o)

159.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001951	Metagenome	612	Y
F003820	Metagenome	466	Y
F009580	Metagenome	315	Y
F010214	Metagenome	306	Y
F083460	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100271913	F003820	N/A	MKLFSYLDYDDCILMNDLQNKINNHLQNALSVCSENFTSLSRLKKFLQDVNNKQRVNYQLRSERCTVIVKVTVVPDKHTTSLSVMTSIINYVKLTIFSTFESVKSPIICYICKISSHLFKNYSQNKINILTSQAFILRLHEIIISKNKENEKMSSSSENSEAKN
Ga0272425_100271914	F000597	N/A	MSMSDDFFASESLTTECVLSSNEISYSLKSLIDIKAADYSFINEVIAQIVCDQLQIKLLTLIKAKSIQEFDNHYAKKLITHVIYLNLMIQGHMIDIASMLITRLNQH
Ga0272425_100271918	F010214	GAG	VSVLFIYDASSLLCSSLMIFYTTMFRFDLRFKDERCFLCTRDAHDCNVHKAAFSCSMIVIHCAEKYVMKERHTXXEDRVXLYXVTLFFSXFDLCHIDVEXIVSIDVRSQSFNVXLXSMKENVFXSFSXALDFSRRQIYDLTSSKEDELKSSQYISMINESLLLRAL
Ga0272425_100271920	F083460	GAG	MXLRMKSSDSQAYSDALFKLNASSIEYAIKRXLHELLNHRLNHEESQGNSKNDDENEAAKAV
Ga0272425_10027197	F009580	N/A	MIYIQIFKHDLTQKLNFSCKQRDFFIYTDNIIVINIHDMQSEEFFIXAFFNDFAQMLQLAVVTQLSLVADFLDLKNDQNFILNDDNNKT
Ga0272425_10027198	F001951	N/A	MIIIKLKFIDSSRNEREKDEDIVKTTVTKMIIFELKELLVNAEMFLTLMNEIMTKMK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272425_1002719

Overview

Ecosystem & Geography

Associated Families

Sequences