Scaffold Ga0272425_1002369

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1002369
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31369
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010658	Metagenome	300	Y
F015552	Metagenome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_10023695	F010658	N/A	MINSNAINNFIIKAFVKRKEYFTQKKSNAYNLIIVDKNLLFNENKKVNKETKLLLIAI
Ga0272425_10023696	F015552	N/A	MTQLTLNAKILNIIKITLFFVNYSKKSNLFEKKRTHLFAQLVIERIATLKKIHNNILKMQERLIKY
Ga0272425_10023699	F015552	N/A	MTQLALNAKVLNIIKITLFFANYNNKLNLFREERTHLLAQLVIERIATLKKSLLNISNFLIFFLRKK