Scaffold Ga0272425_1002179

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1002179
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33323
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (13.95%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003820	Metagenome	466	Y
F019584	Metagenome	228	Y
F026450	Metagenome	197	Y
F036994	Metagenome	168	Y
F038484	Metagenome	165	Y
F044227	Metagenome	154	Y
F078020	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100217910	F036994	N/A	MKSVIEADSLVDLLIEEIDYRLVIEADSLVAHEREIDRFTDR
Ga0272425_100217911	F036994	AGCAG	MXNKMIIEADSLVDLLIKEINYRLVIEADSLVAREREVDRFTDR
Ga0272425_100217912	F044227	N/A	MKLRMKSLNDEACTYALLKLIASAIKNATKCXLLELLNNHRHHEESQSSSEDDNENEALEAI
Ga0272425_100217913	F038484	N/A	MYITRVLSAFXKSSRIFIILLLRCNLCVKIVLMSATHSLYFFHHXFHXSLXYCVIAMLSLVEIIVKKRVYYLHLNCIFASSXMKTFRSTIFLMTSKREMTXLTLVKXACINSYTCLISCIQSLTXLCNMILFCSMFRXTCSKLMYVSVFRVSMFTLLNASATXHRVXFXSVSNLHSLLNSSSFLSRXCQTDTLNAISDLTTAEYTCLAFVKIAFHMKTLRXLSVSILVTXFIFICRRCTSYCSFMFNCIFRTHTSDFDLITELFICMLVIMLNLFDFLVKCVSSYFSDANVASXMQTHFTQTSYALLSVLQISSVNLS
Ga0272425_100217931	F026450	N/A	MSRLFKEHFEASFFIVEDNDSFAEIITSSMTMKALKKRCEELKARLQAREITSSSSTYSERSRSQKILDSSLFTDEKNSIXKNXYEKVQNKLEINVDLFSSERVKLSYVHFRLFDDATEITQSKCERDCFNSYKIVDKLLKELAQLFNDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIVDLKNKINSRLRFA
Ga0272425_100217932	F019584	N/A	LIQLSTLKEIHFYLIXLNNDQRAIQEIKNKEAMIKAXTTKQIIYAEESVKATRKIIEMKMTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALDDEFDHSLNFDSESDSKN
Ga0272425_100217933	F078020	N/A	MRFFFDRLISAXKDAALTLNIEKFFFEAVEADRXSTLKAELIEEFDDRDHFECEALTDIEKTEMKASNXFEKTMTSFCISSSISFLFIQSFLNMTSXXFISAINIETVNFLXLSTVRLSRILXVMIFLVSFSSYSLINFSLASCMSXISSFXHIXSTSFVXIKM
Ga0272425_100217940	F003820	N/A	MKLFSYLKYDDHILMNDLQNKINNRLQNALSVCSENFTWLTRLRIFLQDVNNKQXVNYQLRSQLCTVIVKVTVVSDKHAATSLSVMTLIINYVKFIIFSIFESARSFIICYICKIFNHLSKNCSQNKINTSASXAFTLRLHEIIISKNKENEKMSSFEDNEAKN