Scaffold Ga0272425_1002052

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1002052
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34954
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (8.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F005901	Metagenome	386	Y
F042102	Metagenome	158	Y
F064252	Metagenome	128	Y
F086376	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100205218	F064252	GAG	VNQSRSHQFTESQASTKSLLRQSIKNHTXRESFTLFDNDHHKSFKFLNSSVFIDEDESTXDSXRIKIDDKLQINVNHFVDEIICIVYVISRLEDDAAEHIFAXRRYDASHSYILIYELFEHLKEIYNKLNRNXKCCCKYNALRQADKSFNVFYFNFMKLFSYLDYDNCTLMNDLQNKINNHLQNALSVCSENFTSLTRLRIFLQNVNNKQXVNYQLHSERCTVIITVIIKVMIVSDKHAATSLSVTTLIINYVKSIIFFISESARLFIICYTCKILSHLFKNCSQNKIDTLTSCTFTLHLHEIVISKNKKNKKMSSFKNNEAKN
Ga0272425_100205219	F000597	N/A	MKDVLISSTKSMSDDSFASESLTIECVLSSNEISYSLKSLIDIKAANYSFIDEVITQIVCDQLQIKSLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHTIDTASILITRLNQH
Ga0272425_100205232	F005901	N/A	MIYVRLTXSAQLQHKFLNSSVFINKDESTXNSXRIKINDKLQINVNHFVNETICIVYVISRLEDDAAEHIFAXHHYDTLHSYISIYKLLEHLEEIYENQNKNQKCRCKYNALKQADKLFNIFYFNFMKLFSYLNYDDCILMNDLQNKINNRLQNALSVCFKDFASLHHFKSFLQEVNNKQXVNYQLRSQLCTVIVKVTVVSDKCATTSLFMMILIIDYVKFIISFISESARSFIICYTCKILSHLLKNCFQNKINTSASXAFIFHLHEIIILKNKENEKMSFKNNEAKN
Ga0272425_100205233	F042102	N/A	MTRSTESESVSIVRYNFQNVKRESLLSQNXTASEEEDMNASSNTEEENTNVLFFDHEMIKISISTELNAXISTHEADDIVVFIKYICQQHDIEIKTHNDMIQMLEDVNEINIMLKATQMRLQKEMRNKNVIICHLETASSXQSTSIFEDHFLKSIKLLDSLLFEDSTQNVNNXLFQMQNKLKINKNHFSIKELKIAYIKSRVDKTAIKHIATXMRNMITNSFLEAEEILSIINKMYDDLNHHHTTQRQYLKLYQNKIFFHEFXMKFQRFNAELEYNNETLLNNLQHKISSDLQRATLNEXITNLNEFVNICMQVDVRLTKLNARLIIKVSAISAARSVASTSSARLTSSVSAXKKLRRLNLNFIQKELFKKELCFKCKKSEHRAYDCFKTTQVHKIVANSKNDLFSSK
Ga0272425_10020528	F086376	N/A	MIRSTESESVSTAHYELQNARRESLLSQNRTVSEEEGMNVSLNTEKENTNTLFFDHEMIKISINTELNDXISAYEADNIIVFIKYIYQQHNIEIKTHNDMIQMLEDVNEINIMLKITQTRLQKENRNKNVIIHHLKAASSQQSTSISEDQFLKSIKLLNSFLFEDSTQNVNN