Scaffold Ga0272425_1002006

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1002006
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35508
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (13.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Xylariomycetidae → Xylariales → Xylariales incertae sedis → Monosporascus → unclassified Monosporascus → Monosporascus sp. CRB-8-3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F018839	Metagenome	232	Y
F037508	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100200629	F037508	N/A	VIFRLEGNADQQIYAKHHVNAFSLYQSLSELLKHLKEIYEDQNLIRKCRCKYVALKQLNKSFSSFYSEFTRIFSFLNYDDITLMNDIQNKINNHLQNALSVCLIEFNSLDKLKIFLQDVNNKQ
Ga0272425_100200630	F000597	N/A	MSSSNDLFASKSLTTEYVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHVIYLNLTVQDHMKRFVSMLITQLDQHQMILEKT
Ga0272425_100200640	F018839	N/A	MIAKVVTFDRLTSDLYAAVFIIAIFIELKDEAKLTELGDFTILLNEDDFSLSQVTTEEIDLFSI