Scaffold Ga0272425_1002005

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1002005
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35511
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (20.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F010214	Metagenome	306	Y
F028367	Metagenome	191	Y
F086377	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100200513	F028367	GAG	LCKLDEILSKENYFEKPFLIDAHLISQNRSFSLRSLIDSDSAVYTIIHSNLVDKVCEKLEIQPISLTKEKLIRDYDEKISKKIITHKILLNLIIESHKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMRNDVIVFPNQLNTSISIFPIPLNSKHSS
Ga0272425_100200520	F086377	N/A	MIQRFXDQRQRISILNCDSVQILIVYAEAKFFFEFLDEENKNDHLKVIDLNEIFAQILIQITLKF
Ga0272425_100200527	F010214	N/A	MXCSSKFLMKVSVLFDYDASSLLCSSLMIFYTTMFRFDSXFKDERRFLCTHDARDCNVCRAVFSYSIIIIHXAEKYVMKERYTRXKDRVXLYXVTLFFSXFDLCHVDVEXIVSIDVQLQSFDVXLXSMKENAFXLFSXALNFPRE
Ga0272425_100200544	F000597	N/A	MKDVLISSTMSMSDNSFASESLTTECVLSSNEISYSLKSLIGIKAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITYVIYLNLTVQSHTIDTASMLIIQLDQH