Scaffold Ga0272425_1001974

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1001974
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36049
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (38.46%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009580	Metagenome	315	Y
F010214	Metagenome	306	Y
F021026	Metagenome	220	Y
F044227	Metagenome	154	Y
F061402	Metagenome	131	Y
F066295	Metagenome	126	Y
F087979	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100197410	F009580	AGCAG	MIEVRMKRLRLIDKMICIQISERDLTQRLNFSCKQRDFFIYTDDVIVVNIHDMQSEKLLIXAFFNDFAXMLQFAVVAQLSLIANFLDLRNNQSLILNDDNDET
Ga0272425_100197413	F087979	N/A	MKEKNESSTFIYMNXAESRLDNSFIDLRLQKFMHITEIIETELLKLN
Ga0272425_100197414	F044227	N/A	MQLQIKSSNDEACTHALLELIAFAIKNVTKCXLLKLLNNHHHHEEFQNSDEDDDENEAFEAI
Ga0272425_10019742	F061402	N/A	MQDDXFVXLFMIEFIDNNAISSSIEQSTFFLNKSFHSHMSFDLNSIEYEITXAKIEAGKAENIFKHMK
Ga0272425_100197422	F010214	GAG	VLFIYDASSLLCSSLTIFYTTMFRFNSQFKDERCFLCTCDAHDCNVRRAAFSCSMIVIHCAEKHVMKERCTRXKDRVXLYXVILFFSXFDLCHVDVEXIVSIDVQSQSFDVXLXSMKENVFXSFSXALNFPRRQIYDLTSSKEGELKPSQYISVIDESLLLRAL
Ga0272425_10019747	F066295	AGAAG	LKTRLQAKENISSDFTYFKRSRSQKIPDSSLFTDEKNFTXKNXYGKIQNKLEINVDLFSNERVKLNYIHSRLFDDAAEITQAKCKRDCVNLYKIIDDFLKKLAQLFDNSNKKVNFRKEYYNLIQEFKKFNEFYTQFQRLSFYLDYHKKQLIIDLKDKIHSCLQFIXVD
Ga0272425_10019749	F021026	N/A	MIVFCILRQAQFKVLVFALIDSEVFAYVFMNKFFAQQHHFFLHQLTHSHRLQEFDDQVTLINDIIYIVEITMILDEHIEKLFFYIIELNQYFIIMSLSXLCHHIINVNFEHNILILFFFFCFNHYCSFFVKIYDLNQQEENFSFKVNKVAFFQSRS