Scaffold Ga0272425_1001720

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1001720
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39619
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (26.32%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F010214	Metagenome	306	Y
F028368	Metagenome	191	Y
F036504	Metagenome	169	Y
F036994	Metagenome	168	Y
F055318	Metagenome	138	Y
F057010	Metagenome	136	N
F074203	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100172012	F007840	N/A	MINAIERQNNTRKSIESTARLVELLDDLQLIKYASFISINRISNKESSLIARESNRSRESINFQIKQQKRLHLLLSSIALRSISFF
Ga0272425_100172013	F057010	N/A	MSRFFKERFEASFFIVEDNDSFAEIITPSMTMKALKKRCEELKARLQAKEIISSSSIYSERSRSQKILDSSLFTDEKNSTXKNWYEKVQNKLEINVNLFSSEXVKLSYVHFRLFDDAAEITQSKRERDCFNSYKIINELLKELAQLFDDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQQLFFYLDYQEKQLIVDLKNKINLRLRFAXVTQLIQLSTLKEIRFYLIRLNNDQRAIQEIKNREAMIKAXTTKQIIYAEESVKATRRIIEMKMTDQSKPRDAVLTSIKENDLLIENCFLCHKSDHTSKECSNRPFRINALNDEFDRSSNFDSESDSKN
Ga0272425_100172015	F028368	AGTAG	LCKLDEILLEENYFEKSFLIDAHLILQNQFFNLRSLINSDSVAHTLIYTNLVNKVCEKLEIQSISLIKEKLIKDYDEKISKKIITHKILLNLIIKSHKKLTVSMLITDINHHEVILSKLXMNKNEILLNMQNDVIVFLNQLNTSISIFSIFLNSKHSNXSRSTSSSSITQTKISMMLKQLVSITAQKKSFLIXSIDATLFKTLLNHSKRNQTEVLLKSCLDHSIKETXN
Ga0272425_100172017	F074203	N/A	MSKRSFIKERFEEFRSHFSQISETDSLKSSSAESFINEDDKSFIETVILSVSIENXKTXCMILDRETDXLNELSKQRDDKIKELKTRLQTKEITSSDFTYSEHSRSQKIPDSFXFTDEKNSTXKNXYDKIQNKLEINVNLFSNEQVKLSYVHFRLFNDAADVTQSRRERDYVNFYKIVDDLLKELAELFNDSNKKVNFHRKYYNLIQESKKFSEFYTQFQQLSFYLKHHKK
Ga0272425_100172019	F036994	N/A	MXDKVIIEADSLVDLLIKEIDYXLALEADSLVACEREIDXFTDR
Ga0272425_100172021	F036504	N/A	VIFRLEDNADQQIYAKHHVDAFSFYQSLSKLLKHLKEIYKDQNLIQKCYHEYVTLKQLNKSFSSFYSEFTKIFSFLNYDDIILMNNIQNKINNHLQNMLSVCLIKFSSLDKLKIFLQDVNNKQQVNYQLRDEQXTVKSITASKKRFVSSLTSASVLITNYVXLVTFFTFESEXSRMLIICFNCKVLSHLLKNCFQLKTSTSTSCAFTSCLNEIIMSKEKKKLFTEKLKNEIKN
Ga0272425_100172031	F055318	N/A	MLRDDETLCVDRVQSFRDRADFDNLNAHATSNLHADEKVK
Ga0272425_100172032	F010214	N/A	MXCLSKLLMRVSVLFDYDTSSLLCSSLMIFYTMMSRFNSQFEDERCFLCIRDARDCNIHKAVFSYLMIVIHXAEKYVMKERCTXXEDKVXLYXVILFFSXLDLCHVDVEXIVSINVXSQSFNVXLXSMKENAFXSFSXTLNFSRE