Scaffold Ga0272425_1001708

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1001708
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39781
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (8.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F010214	Metagenome	306	Y
F035571	Metagenome	171	Y
F036035	Metagenome	170	Y
F070710	Metagenome	122	Y
F075493	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100170812	F035571	N/A	MILFCSMFKXTYSKLMYVSVSRVSMFTLLNASATXCKVXFXSVSSLHSLLNSSSFLLRXCQTDASNAISDLTTAEYTCLAFVKIASHVKTSRQLSVSILMTXFIFICXKCASHCSFMFSCISRTCTSDFDLITEFSICMLVIMLNLFDFLVKCISSYFSDANVASXVQAHFMQTSCALLSVLQISSVNLS
Ga0272425_100170813	F075493	N/A	MQSVQAMHEYMLRCLMTSFAVALQAIHVXNIFKVQISVQIYAFNFDVHCKNAFCFLKIITHLYHLIAQMQSLCXNYVDVCNAFSVLFSSLISLIFVILHYCDAIACXNHCEEESASSVSQLYLRIFLNEDIQKYYFLDDE
Ga0272425_100170819	F036035	N/A	MKDDAMQREHHKLEKASRNHEHDDNDHLNDTLDKHTESISNCDIIKELNEREKK
Ga0272425_100170821	F000597	N/A	MKDVLISSMISMSNDSFVSESLTIECVLSSNEISYSLKSLINIEAADYSFIDEVIMQIVYNQLQIESLILIKAKSIQEFDNHYAKKLITHIIYSNLTVQDHMIDTAFMLITXLNQH
Ga0272425_100170835	F010214	GAG	VFVLFIYDASSLLCSSLTIFYTTMFRFDSRFEDERCFLCTRDAHDCNVRRAAFSCSMIVIHCAEKYVMKERCTRXKDRVXLYXVTLFFSXFDLYHVDVEXIVSIDVRLQSFDVXLXSMKENAFXSFSXALDFPCR
Ga0272425_10017089	F070710	N/A	MIKQSFLXILQYNIRKSLRIQESFLIDRKVREFNIVVIQKQDHNNNDSQSFSSAHNFFHLVKNSSSQSRTCIYVNKHLKLNQXIVKTVESDICLIRILTCNTNNETQMLRLLNVYNSCSLFTTFTERFSIISHLNKLLKNDCKQLIVEDFNLHHSHXEEXRCFTHHMMTDTLLNVITNVRLKLLLKSSIITREAHN