Scaffold Ga0272425_1001483

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1001483
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44104
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (15.79%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F010214	Metagenome	306	Y
F021452	Metagenome	218	Y
F065268	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100148321	F010214	N/A	MRVSVLFDYDASSLLCSSLMIFYTMMFXFDSQFKDERRFLYTRDARDCNVRRAVFSYSMIVIHXAEKYVMKERCTRXEDRVXLYXVTLFFSXFDLCHVDVEXIVSINVQSQSFDVXLXSMKENAFXLFSXALNFPCE
Ga0272425_100148334	F021452	N/A	VTENNIFIFCFISMSDDSFNFKSFIVDVILSSLEKIFRFFALINIKVIDMTFINESLMSELCKHFDIQLILLSKSKLIQSYNEIFDXKLITHALYTLIMIQEHKNEIMFLLITCLKQHKIIIENLXLKRNQILINFANDXLIFLLNI
Ga0272425_100148336	F065268	AGAAG	MSIAHYKLXNARKESLLSQNXTASEEEDMNASSDTEEKNMNALLFDHEMIKISISTKLNAXINTYEVNDIIIFIKYIC
Ga0272425_10014837	F000597	GAGG	VTFIKDTMKDVLISSMISMSDDSFASESLTIECVLSSNEISYLLKSLIDTEAADYSFINEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLIIHVIYLNLTVQDHMIDTAFMLITXLNQHQMILRKTXMNKI