Scaffold Ga0272425_1001444

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1001444
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45232
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (17.02%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F037509	Metagenome	167	Y
F041516	Metagenome	159	Y
F064254	Metagenome	128	Y
F070712	Metagenome	122	Y
F096307	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_10014441	F002432	N/A	VNQDVERELRIYCNYMQNDXVKXISMMKFSDNFNIFSTISMISFYFNKEFHPRMSFDSDMTDYETTCERLEARKADDIVIQMKELLSFDRQQLKKTKLIIEVQINKHRRNVIYEVNDXVXLSFRNVKTMRLCKDLKDKQLKSYQITVKARVFYHLRLSVSMKHLHSMFSSKLLRSYSEDSLSEQHAESLRLIIIDDDDDEHXEINNILNFRCYRDRIQYKVKXKDLDRDNEXYYVDKGEFNDFEKVLNEFHALYSRNSR
Ga0272425_100144411	F041516	N/A	MIQKVIHIHEAYNLSLRNHKIIHEKENLSNIKKMLHMLKESIFVKNFNLHHFTXEELFYS
Ga0272425_100144416	F096307	N/A	MLYIVVTQIDASLKENVLKHKKDVDLKDVCNTKKCVCHRNLLTTRNIKKCVYLKDNKSXLENAKEEKRCXVIFESDLNQI
Ga0272425_100144417	F002432	N/A	MQNDXAKXLSMMKFSENFNIFSIISMTSFYFNKEFHLRMSFDSDTTNYKTTCERFEARKVDNIIIXMKELLIFNHQQLKKTKQIIEALINKHKRDVIYEVNDXVXLFFRNVKTTRSCKDLKDKQLELYQITVKVEIFYHLRLSISMKQLHSMFSSKLLRSYFNDLLSEQHSKSLRSLTIKDDDHXKIDDILNSRHYRDXIQYKIKXTELDQNNEXYYVNKEEFKSSKEVLVKFHKLYSDKSH
Ga0272425_100144422	F070712	GAG	MNDIKEKKFLIKVRKQVIFAEKXDSLNLYRKIKVTTLVDHSKSCDVILTNVKNIDLQAEICFICHKSNHIFRECSDQSSKVNALNDENEFNHLNFDSDSNSKN
Ga0272425_100144424	F037509	N/A	MILISIFIQINSTDNEMSIKKFVYLMINDIKRQNNIKKSIESMRTYDHVIARESIAQSVTSVQID
Ga0272425_10014447	F064254	N/A	MQKLYELVFFLLSLSFIXFFNDVTVXNXFSMLVENIIQMITVITLMISRSFLKFMMFSLHCIIFHSIFHLEHVNKTCLIDIQSLLHSHIVVKTLNTHLSCRNXLKSIFLMHSCVNNTLXDFAXLLCKCRCXXVIFDVKYQKXAALNLFLQTILHVCLICFCMNVSHVIISVRXCLISNKDNLCTSSVILSATSFSSTSAYFIIQCNFSVTS