Scaffold Ga0272425_1001418

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1001418
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45777
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (26.53%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009377	Metagenome	318	Y
F036035	Metagenome	170	Y
F041516	Metagenome	159	Y
F102180	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100141826	F009377	N/A	MTRSTESKSVSIAHYNFENVRRESLLSQNQAASKKEKDMNAMLNTEKENMNALLFVYEIIKISINEKLNAXITVNETDDIIIFIKYICQQHDIEIKIHNDMIQMLKNVNKINIMLKIMQTHLQKEVKNKNVIIHHLKAASSQQSTLISEDQFLKSIKLLDSSLFEDSTQNVDNXLSXMQNKLKANKNHFSIKELKIAYIKSXVNEAAVKHIASCMQDIFLNSFLKVEEVLSMINKMYNDLNCHHTTQRQYLKLY
Ga0272425_100141827	F009377	N/A	MTRSTELESESVSIACYKLXNAERESLLSQNXTASEEEDMNASLNTEEENMNALFFNHEMIKISISTELNAXISAHEADDLVAFIKYICQQHNIEIETYNDMIQMLNDVNKINIELKAINIKLKATQTTLNVVQTRLQKEMKKKNVIIHHLEATSSQLSTLILKDXFSKLTKLSDSSLFEDLRQNVNNXLFXMXNKLKMNKNHFSIKEMKIAYVKSXVSETMIKHIALRMRNMITNSFLEAEEILSIINKMYDDLN
Ga0272425_10014183	F102180	N/A	MRMNXELNKRLRELTLVIIHHDELKELVARAKHFADVATANQECHEKIYKVYSDSQTSLKTVKVIISIKDQTCLQRVQIMHESI
Ga0272425_100141833	F036035	N/A	MKDDAMQRESHKLEKAFKNHERDNSNHSNDTLDKHTESISDCDVIRESNEKEKK
Ga0272425_100141835	F102180	N/A	LTLIITYYDELKKLVARAKHFANVVIANQECHEKIYKVYNDNQTSLKTVKAMISTKDQTHLQQVQIMHESIQS
Ga0272425_10014187	F041516	N/A	MIQEVIHIHEAYNLSLRDHEIIHEKENLSNIEKTLHILRESILVKDFNLHHFTXEESFYS