Scaffold Ga0272425_1001391

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1001391
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46239
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (17.95%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008115	Metagenome	338	Y
F018839	Metagenome	232	Y
F065268	Metagenome	127	Y
F078020	Metagenome	116	Y
F094620	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100139121	F094620	N/A	MKFSDNFNTFLTILMTSFYFNKDFHSRMSFDSDTTDYKMICQRIEARKIDDIVTXMSELLIFDHQQLKKIKQITEAQMNKHRXDVIYEVNDQIWLVFENIKITKSCKNLKDKQLNFYSITVKVETFYRLQLSRSMKHIHSVFSSKCLQSSSNDFLSRQHSEFFRSLIIEENEKHXEVNNILNFRRYRERLQYKVKXIEIDRDDEXYYVDKEKFNDLKKVLNEFHKLYLNKSH
Ga0272425_100139124	F078020	N/A	MQFFFDRLISAXKDAALTLNIEKFFFEAVEADRXSTLRAELIEEFDDRDHFECEALTDIEKTEMKAFNXFEKMMTLFRIFSSISFLFIQSFSNMTSXXFISVINIETVNFLXLSTVRLSRILXIMTFLVSFSSYSLINFSLASCMS
Ga0272425_100139126	F008115	N/A	MLXNVYQLHDLFSSIVLNRDFQFISTMXKSLCKRLRITASLFTVYHSEIDNQSKRVNQDVERELRIYCNYMQDDXIKXISMMKFSNNSNIFSITSMTLFYFNKEFHSRMSFNSDTMNYKITHERLEARKANDIVIXMKELLNFNRQQLKKTKLIIKVQINKHKRDVTYEVDDXVXLSFRNVKTTRLYKDLKDKQLNLYQITVKVSVFYHLHLSVSMKHLHSMFSLKLLQSYSEDLLSKQHSELLRSITIEDDEHXKIDNILNFRCYQGXIQYKVKXTDLDKDDKXYYVNKEKCYKHV
Ga0272425_100139128	F065268	N/A	MIKSTELESKSVSIARYKLXNAERESLLSQNXTASEEEGMNALSNTEEKNMNSLFFNHEMIKISISTELNAXISTHEADDLIAFIKYIC
Ga0272425_10013919	F018839	N/A	MMIAKVVTFDRLTSDLYAAASIIAMFIESKDEAKLIELNDFTILLNEDDISLSXVMTEEVDLFSI