Scaffold Ga0272425_1001381

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1001381
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46413
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074199	Metagenome	119	Y
F075492	Metagenome	118	Y
F078022	Metagenome	116	Y
F080689	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100138118	F080689	AGAAGG	MEMGILWIMALVLGTLPLLTLALMGSYRLGRRQRRDEVVIALMDDDAFVRDMGALDRVRDHIRERNTRYAKWRYQQARAAGAAAETAGAGAGRA
Ga0272425_100138124	F074199	AGGAGG	MERHDLTRLIDRIEAPLYLACGATGAGLQARVWWGFAGGVAALAAVLLLVWSDRRALAHGAEPSMGLDDYRRLVRLLWWAAGMVLAGSIVTVVVRALVIAATGAGQ
Ga0272425_100138143	F075492	AGG	MSDYPNYPNPTHTTGGSSADNTTVDEILAVIAVEEPRGATAAQVARAIGLSLNGEVVQRLLEELVEQGLLDRLGIGHGAVYTLRAGV
Ga0272425_100138144	F078022	GGAGG	VTGDRDYITLAEASKRAGLKNSGSLYRAVRSGRLKTVTAMAGPRIVRLTTQAWLHEYLDSQRRGT