Scaffold Ga0272425_1001364

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1001364
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46863
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (21.43%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008735	Metagenome	328	Y
F009580	Metagenome	315	Y
F010214	Metagenome	306	Y
F032884	Metagenome	178	Y
F033265	Metagenome	177	Y
F036035	Metagenome	170	Y
F070710	Metagenome	122	Y
F075493	Metagenome	118	Y
F089602	Metagenome	108	Y
F104134	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100136427	F032884	GAG	MTIRNERVEREECERTKKNESTMTRVEKERLYAQTIDVIDQRKDIKQRLXSGYM
Ga0272425_100136428	F075493	N/A	MQSVQAMHEYMLRHLMTSFAVASQAIHVXNVSRVQISIQIYAFNSDVHCKSAFCFLKIITHLYHFIAQMQSLCXDCINICNAFSVLFSSLISLIFVILRYCDAIACXNHCEEESVSSASXLYLCIFLNEDIQKYYFLNDEXARNDAINFRQTNVY
Ga0272425_100136430	F010214	GAG	VLFIYDASSLLCSSLMIFYTTMSRFDFRFKDERCFLCTCDAHDCNVRRAAFSCSMIVIHCAEKYVMKERCTXXKDRVXLYXVTLFFSXFDLCHVDVEXIVSINVQSQSFDVXLXSMKENVFXSFSXALDFSRRQIYDLTSSKEDELKLSQYISMIDKSLLLRAL
Ga0272425_100136433	F104134	N/A	MIRFLXSVNTSAILCRICSINFFCIFSISLLFIILIMTSHLLQSNNKSSLKCCFLVAISSLVTFAHDVIFVERRVLLYVCNCLLSSXTDVFSFCTFFAINAFXFAXCFSSELSXRHQISFNAISFHEXSLLFSFSNVDIFISRSIMLATFSSLLREHFNFTSLFSCDKSTSLTIIFESALLRFVQFIVVQSSSRFTLSCL
Ga0272425_100136436	F070710	N/A	MIKQFFLQILQYNIRKSLRIQESFLINRKVREFNIVTIQKQDCNNNDLQSFSSAHNFFHLVKNSSSQSTTCIYINKCLRFNQXIVETAESDICLIRILTCNADDKTQTLRLLNIYNSCSLFTTFTEKFLIISRLNELLKNDCKQLIIEDFNLHHSH
Ga0272425_100136445	F009580	N/A	MLVDKMICIQISERNLTQRLDFFXIQXDFFIYADDVVVVNVYDMQSEKLLIXAFFSNFAXMLQLAVVAQLSLVADFLDFRND
Ga0272425_100136447	F089602	N/A	MKDEXSSLIKISLKEDDDLSDIIDIAFHAINQRKVFHQETFFLLIEEIVVVDKAICVLLQSFAKI
Ga0272425_100136448	F008735	N/A	MSLLIYDESXLDINDLDSMKEIMIVVYVHALYQTLLSDIQMIFVLLILRYVEKLFEFNEDXDSNKVCRNLNDKERLIVQSLCNDLSYHHERLRIQFLIDXRTRSDEXKQDNDVMLLNLILKLAHYAKDFNXVFNHTLSKLFNSTLIIDQKTMRLLHLSKKITRQDFNVXKRCKKCKSFVISETRLN
Ga0272425_10013645	F036035	N/A	MKDRTKDDAMQRKHHELEKASRNHERNDNDHSNDTLDKHTESISDCNVIKESDKRERK
Ga0272425_10013649	F033265	N/A	MITFQSKKRFESCYETSINCMIYSVLLFRTETLNSYQLCEKVFASDXESQLVYSQSIILRSTINRNKSIKTLNANLESTAITCKTTKSNKYLXXNSATIQIPSXSLQXLSSTSIKNFTLEXVSIQIXXTTKQLVNDLKLEKQMILSFEXNNYXTLTVNNXKRXSXSSKFRSINIDETSHM