Scaffold Ga0272425_1001332

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1001332
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47481
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (31.37%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F008735	Metagenome	328	Y
F020121	Metagenome	225	Y
F078020	Metagenome	116	Y
F086377	Metagenome	110	Y
F094620	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100133210	F094620	N/A	MKFSDNFNTFLTILMISFYFNKDFHSRMSFNSNTTDYEMTHQRIEARKIDDIVIQMSELLIFNHQQLKKIKQIIEAQINKHRXDIIYEVDDQVXLVFENIKITKSCKDLKDKQLDFYSITVKVEIFYRLQLSRSMKHIHSMFSSKCLXFSSNDFLSKQHSEFFRSLIIEENEEHXEVDDILNFRXYKERLQYKVKXIEVNHDDEXYYVDKEKFNDSEKILNEFHKLYSNKSH
Ga0272425_100133211	F020121	GAG	MKKLTEHLHDEMLIAQIIYKFNVNLFCRSCFKYFVEDEVXLNACNLSITHFIIKLNDYNVDLFKIKRVFKNNSLIIELNLSIFMKIHSIFHVILLNHITSDSFSSQRQKLXKLIVIKNNERFXYVNSILNFKYDKCYNSFLLKYYIDXKDHFSTXKSFHLLNNYKQMLNEYHFVNSVVEESHVLSCVMSQYQCQEL
Ga0272425_100133222	F086377	N/A	MIQHFXDQRQRILILDCDSVQILIVHTEAKFFFEFLDEENRNDHLKVIDLNEIFAQIFIQITMKF
Ga0272425_100133225	F001951	N/A	MIMIKLKFIDSLRNERERNEDTVETTVTEMMIFELKKLLVNVKMFLTLINEMMIKMK
Ga0272425_100133227	F008735	N/A	MKEIMIVVHVHALYQTLLSCIQLIFVLLILRYVKKLLESKSNEDSNKVCKRMNNERRLIVQDLCDNLSYHCKKLRIQSYINXRTENDEXKXNDDIMLLNLILKLLHYAKDLNXIFDHTLSELFNSMLIVDQEVVKQLHLSKRVTKRDFNIXKRCRKCRSFIMSKTKLN
Ga0272425_10013327	F078020	N/A	MQFFFDHLINAXKDATFTLNIEKFFFEAVETDHXSTLKAELIEEFDDHDHFECEALTDIKKTEMRAFNXFKKTMTSFRIFNSISFLFIQSFSNMTSXXFISAINIETVNFLXLSTVRLSRILXIMIFFVSFSSYSLINFSLASHMSXISSFXHIXSTSFVXIKM