Scaffold Ga0272425_1001312

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1001312
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47937
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (8.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F010214	Metagenome	306	Y
F104136	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100131229	F010214	N/A	MXCLSKLLMKVSVLFDYDTLSLLCFSLMIFYTTMFRFDLQFKDERHFLCIRDAHDCNVHKAVFSYSMIVIHXAEKYVMKERCTXXEDRVXLYXVTLFFSXFDLCHVNVEXIVSINVRSQSFNVXLXSMKENAFXSFSXALNFPRK
Ga0272425_100131236	F104136	N/A	MIFSIRLTQIFSESXSMNKLXIXTNSSTFACKSTFDXRNXMLDQLSRHQXLKLLALSLASQXXSRLRSQLQSLHERNLEYXTLILLKRSCLKKNFASNARSQNIKHTTVLNQFRCTKLQXIQKMICFHQSSNXEQYTHILLHQHVXXFIXFHVTSVPRLNKAEALINSQXTLASSLRND
Ga0272425_10013125	F001253	N/A	MKDVLISSTMSSSNDLFASKSLTTECVLSSNKISYSLKLLIDIEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIKKFDDHYAKKLITHAIYSNLTVQDHMKRFVFMLITXLD