Scaffold Ga0272425_1001237

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1001237
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49391
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (7.32%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F008169	Metagenome	337	Y
F033265	Metagenome	177	Y
F036994	Metagenome	168	Y
F048019	Metagenome	148	Y
F057010	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100123710	F036994	GAG	VIIEADSLVDLLIEEIDYRLALEADSLVAREREIDQFTDR
Ga0272425_100123712	F033265	N/A	MFSVIEKTMTSQSKKRFESCYETSIDCMIYSILLFQTETFNSYRLCERVFASNXESQLVYSQFIIQRSMIRRNESIKTLNVNLEFIAITCRTTESNEYLXXNSATISIFSXSSQXSLSTSIKIFILEXVSIQIRLITKSLVNDXKLEKQIVRDLSKASQIEMSFN
Ga0272425_100123715	F008169	N/A	MSSHLFIEERFEEFQDRFSQISDADSLKSRTKSSSAASFIHEDDELFAETIISLVFYEIXKTRSLALDEETDXLYELDKQQEDKIKELKTRFQAKENTSSDFIYSERSRFQKIPDSSLFTDEKNSTXKNXYGKIQNKLEINVDLFSNERVKLSYIHSRLFDDAAEITQARRERDCVNLYKIVDDLLKELAQLFDDSNKKVNFRREYYNLIQEFKKFNEFYTQFQRLFFYLDYHEKQLIADLKDKIHSRLRFVXIDQLVQSDSLKEIHFYLIHLNNNQRVIREIKNKIKRVNDLSKTIFHRATVVTQSVDYSKSYQLKSRDAILTSVKEADILVESCFICHKSGHSSKECLDQPTRINAVNNEYDRFDFDSNFDSKN
Ga0272425_100123722	F000597	N/A	MKDVLISSTMSMSHDSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFINEVIVQIVCDQLQIESLTLIKVKSIREFNDHYAKKLITHIIYSNLTV
Ga0272425_100123736	F048019	N/A	MKIXRFNVNEHAFELFFAQAFVKALQDESTVYALVMINIIEESIIEHQVKAINNEMSRITNALETQTLFIKLKEYENVFLIENADKLLLHEDHDHAIEIIAKSSYESLYNLLNTELMILKQYLNDVLAKEXIKHFINSTDASILFILKKNDSFYLCMNY
Ga0272425_100123740	F057010	N/A	MIMKALKKRYEELKAKLQAREIISSSSIYSERSRSQKILDSSLFIDEKNSIXKNXYEKVQNKLEINVDLFSSERVKLSYVHFRLFDDAAEITQSKHERDCFNSYKIVDELLKELAQLFNDSDKEVNFRRNYYNLIQEQKKFNEFYTQFQQLFFYLDYQEKQLIVDLKNKINFRLXFAXVTQLIQLNTLKEIHFYLIXLNNDQRAIQEIKNREAMIKAXTIKQIIYAEKSVKATRRIIEMKMTDQSKSRDAVLTNVKENDLLIENCFLCHKFDHTSKECLNRSFRINALDDEFDHSLNFDSESDSKN