NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1001179

Scaffold Ga0272425_1001179


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1001179 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50981
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (89.58%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016760Metagenome244Y
F036995Metagenome168Y
F074200Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100117937F036995GGAGMTNAARDERDSAPYDWTLTSGPEGQAFTNETPPLDPAIDQEVTYYTREPDGFGPDDLRWQPITDPAEIAAIEGALAQGIDPPYEVWRDQAPAALTPGDLTPIGEEATASYAWEQTGPAMGEDQLYEVTDPVLIAAYAEAHPAWHGVEIVNPADDYDAAWATDAAHTTNVPAPASLDPALYDAQIDTLAATGATWLEVEWAGDGFALGRYAAGPIERDTNGWEPVRVADGPDDGPLGDAYPDEATARHAAVASNGADLAGARLDLDPAPVATRDRDLTPALDL
Ga0272425_100117943F016760GGGGGMSITGEIKRAARATGRGLFVLAVPRTVRRSTDELRTVEMSPALGLVLRLAAVLVLAGTVLAVHAVGHPLLGLARDALLFVGAVVILALSGALAPQGRLLGRLLLSYAKRESARRGLTWRGRLFRTLARRLEPVMSEKEKGKTNGHQR
Ga0272425_100117947F074200AGGGGGMARHSHSALYINDPVKIVAGIFTIRQAVYVAGIVVLTYGLINVTSRLPYGQSGLGQLHLLLIVGLPALLTLLVVTFAGSGTVEPYARQFTGYLWRTLRATPRRLAYRTVRIARRLRPARRTPVLVYGPVLVADEAAAAIGAESAPDITTIRALPLSTPYVAPVVMTTPVAQTQRVRLLAWLTAHPCVTDEQIAEGAAMNPSAARPRRRELVEAGLVRKVDMDGRTRAGRRAARWAVVGTVGEVVYGTN
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