Scaffold Ga0272425_1001108

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1001108
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53107
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (23.44%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F001951	Metagenome	612	Y
F037509	Metagenome	167	Y
F042102	Metagenome	158	Y
F080690	Metagenome	114	Y
F089602	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100110811	F037509	N/A	MILISLLIQIHSADNEMSIKKFVYLMIDNIKRQNNIKKSIESMRTYDHXIARESIAQSVASVQID
Ga0272425_100110819	F001951	N/A	MMKLKFIDSLRNEKERDDDTVETTVTKMMIFELKELLVNAKMFLTLMNETMMKTK
Ga0272425_10011082	F001253	GAGG	VTFIKDVMKDVLISSTMSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIREFDDHYAKKLITHAIYSNLTIQDHMKRFVFMLITRLDQH
Ga0272425_100110820	F089602	N/A	MKDEXSSFIEISLEENDDLSEIIDIVLQTINQXKIFHQRIFFLLIEEIVIVNKAIHVLLQSFAKI
Ga0272425_100110821	F080690	N/A	MKSSYNLLINDERAVKQFTQSVIENSVEIFRVMQELQNQVXQHDVIILFLFIILSSSTYIELNSQSLMMIAQIIAQILNNQSFFITHLSANSIAVFIASKFEKLLDIFEYEKNKDXLNAXKQSLIQRMNVNDDHYFFHXVKIIYVESXFIIDKKMHNLMNQYRVNDFCIIFIFADXXHKLHHYCNNSFKTEDVYLYLCKTLKQNMNSFVDYYNLFY
Ga0272425_10011087	F042102	N/A	MTRSSESASIARYDLQNARRESLLSQNXTASEEEDMNASSDTEEKNMNALLFDHEMIKISISTELNAXINTHEADDIIVFIKYICQQHDIEIKTYNDMIQMLEDVNEINIMLKITQTHLQKENRNKNMIICHLKAASSWQSTLISEDXSLKSIKLLDSSLFEDSSQNVNNXLSXMQNKLKTNKNHFSIEELKIVYIESXVSEAAIKHIASRMRNTSLNLFLEVEEVLSIINKMYDDLNHHHTAQRQYLKLYQNKIFFHEFXMKFQRFSTELEYNNETLLNNLQHKISSDLQRATLNEXITNLNEFIDICMQVNVKLTELNAQSVVKALMIQAAXSVSSTLTVXLTSSISSXKKLRRSNLNSIQKELFKKELCFKCKKSEHRIYDCLEMTQVHEIAANSKNDLLSSK