Scaffold Ga0272425_1001101

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1001101
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53360
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (23.26%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008169	Metagenome	337	Y
F028667	Metagenome	190	Y
F036504	Metagenome	169	Y
F042102	Metagenome	158	Y
F057012	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100110128	F036504	N/A	MIYVKLTQDACLQQLEDDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIQKCRCKYVALKQLNKLFSSFYSEFTRIFSFLNYDNITLMNDIQNKINNRLQNALSVCLIEFSSLDKLKIFLQDVNNKQXVNYQLRDEQXTVKSIAASKKRFVSSLTSALALITSYVQLTTFFTLESEQSRMSIICFNCKVSSHLSKNCSQLKTSTLTSHAFISRLNEIIMSKEKKLFTEKSKNEAKNCYERTKVE
Ga0272425_100110130	F042102	AGAAG	MNASSNTEEKNTNALLFDHEMIKISINTELNAXISTHEADDIVVFIKYICQQHDIKIEIHNDMIQMLEDVNEINITLKITQTRLQKENRDKNVIIHHLEAALSXQSTSISEDXFLKSIKLLDSSLFEDSAQNVNNXLFQMQNKLKINKNHFSIKELKIAYIESQVSEVAIKHIASHMQNIFLNLFLEVEEVLLMINKMYDNLNHYHTTQRQYLKLYQNKIFFHEFXMKFQRFSAKLEYNNETLLDDFQHKISSDLQRAMLNEXITDLNEFINICMQVNVKLTKLNAXSVVKASVTQAARFVSSTLTIQLTSSVSSXKKLRRLNLDSI
Ga0272425_100110131	F057012	N/A	MTENDIFIFCFISMSDDSFDFKSFTVNIILSSLEKIFRFLALIDTEVTDMTFINESLMSELCERFDIQSISLLKSKLIXLYDEIFDXKSITYALYTSIMIQEHKNEMMSLLITCLDQHKIIIENLXLKRNQILVNSANDXLISSLKIQTSKSVISKASSQSAFYRSESSEICKMK
Ga0272425_100110141	F028667	GAG	MTLKLNEQXIVVQVEHDKRLNQLEIKQMIIDTLKETNKRYXEKMLNLKNKLKEVLHSANQSRSRQSTKPLSRQSIENHTRRKSFTLFDNNHHKSFKFLNSSVFIDEDESTXDSXRIKMNNKLQTNVDHFNNENICIIYVISRLEDDAVEHIFAXCXHDALHSYTSINELFEHLKEIYDELNRNRKCCREYNTLRQADKSFNVFYFDFMKLFSYLDYDDCTLMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIIKVTVISDKCAAISLSVMTSIINYVKSIFSSISESARSFIICYICKILDHLFKNCSQNKINTSASHAFIFHLHEIIISKNKKNEKMSSFENSEAKN
Ga0272425_100110143	F008169	N/A	MPSRSLTEEHFEEFRNRFSQIPDAGSSKPRTESPSAASFIHEDDESFAETVIPFVFYETXKAXSLALDEETDRLYELGKQQEDEIKELKARLQVKENTSSDFTYSERSRSQKIPDPSLFTDEKNPTXKNWYGKIQDKLEINVDLFSNERVKLSYIHSRLFNDAAEITQARRERDCVNLYKIIDDLLKELAQLFNDSNKKVNFRREYYNLVQEFKKFSEFYTQFQRLSFYLDYHEKQLIADLKDKIHLRLRFVXVDQLVQPDFLKEIRFYLIHLNNDQRVIREIKNKIKRVNDLSKTIFHRATVVTQSVDHLKSDQLKSRDAILTSVKEADILVESCFICHKSDHSSKECFDRSTRINAVNNEYDRFDFDSNFDSKN