Scaffold Ga0272425_1001100

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1001100
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53425
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (23.08%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005901	Metagenome	386	Y
F017941	Metagenome	237	Y
F018839	Metagenome	232	Y
F024448	Metagenome	205	Y
F046102	Metagenome	151	Y
F074202	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100110013	F018839	N/A	MIAKVVTFNHLTSDLYVAVSVIAMFIELKDEAKLTELNDFMILLNEDDFSLSRVTTEEINLFSI
Ga0272425_100110014	F046102	GAGG	VTFIKDVMKDVLISSTMSSSNDFFASKSLTTECVLSSNEISYSLKSLVDTEAADYSFIDELIAQNVCDYLQIESLSLIKLKSIREFNDHYAKKLITHAIYSNLTVQNHMKRFIFMLITXLNQHQTILEKTXMNKIKMTIDMKDDRLQFSSFEAHIKASIKAHSTVLSSKKIAIEQKSSTF
Ga0272425_100110031	F005901	N/A	MNDKLIINVDQFNDETICIVYMMSRLEDDAAKHIFARRYFDSLNSFTSIYELFNHLKEIYDELNKNQKSRREYNALRQADKSFNVFYFNFMKLFSYLDYDDCTLMNDLQNKINNRLQNALSVCSKNFTSLTRLKIFLQNVNNKQRVNYQLRSERCTVIVKVTVVSDKRVATSLLMTTLIINYVKSITSFISESARLTIICYTCKISSHLSKNCSQNKVNTSAS
Ga0272425_100110032	F024448	N/A	MKDVLISSTTSMSNDSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIREFNDHYAKKLITHVIYSNLTVQDHMIDTAFMLITQLNQHQMILEKTXMNKINLVIDMQIDSLRFSNFISSQKLIVLLSSNKTITKQKSLTSTHILKRFFTFVTSQFSQKSFSFS
Ga0272425_100110034	F017941	N/A	MKIADLKNNINESIYKQILETNEINENCTLLREAIARDET
Ga0272425_100110050	F074202	N/A	VYEXFLFTCQKEIYMYVEKCLRLFYHXLRLQSLSLTKLLEKCASNFMKTVDCKMNCKTIYISFLLMSSXLFCSDNAFNLALFLDDDFFLKLVISKLRLRVETELNFKEKVILRCSFFTAKDDNLDSSFNLKIATNFIKFRXFIIFHNDXLFFFNLFLSVKCDVTXSKXADAENXAFKSEVVVDLAVINLAVLNNVDNESSLKFENLDXEDGMKRSTSSVSSFFSSDIVN