Scaffold Ga0272425

Basic Information
Taxon OID	3300031453 Open in IMG/M
Scaffold ID	Ga0272425_1001060 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031453 Open in IMG/M

Scaffold ID

Ga0272425_1001060 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	54408
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (18.87%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

54408

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (18.87%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.8	Long. (^o)	159.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.8

Long. (^o)

159.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F010214	Metagenome	306	Y
F019260	Metagenome	230	Y
F038484	Metagenome	165	Y
F070710	Metagenome	122	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100106033	F019260	N/A	MIQELKSISRINIKSEKYSNSELYIKEQENKLNQFIFELISKLKLNANHYSTFKFHLLYEYSCLLKNSVAQALSRMTAQHDKLVTIEQLVVLLRQVFDDSDKQEIAQRFISALRMXNCIFIEYLFNFQQHIDAIEYDVVTQKFNLKNELFSELKALLIQVNVSSLNYEQLIIKCQQLNSXYRVTVQNLFKSKAVIHSVSVISTVLAYLVKYATLLTGLKATILSSKNLMNLLIINMKKRDSLTFKKHQHCMINHLCLYCDKSEHQTAICNSKLKIQLQVISLFALAIFIDNLAFNTSFALKKV
Ga0272425_100106040	F010214	N/A	MKVSVLFNYDASSLFCSSLMIFYTTMFRFNFRFEDERRFLCTRDVHDCNVRRAVFSYSMIVIYXAEKYVMKERCTXXEDRVXLYXVILFFSXFDLCHVDVEXIVSIDVQSQSFDVXLXLMKENAFXSFS
Ga0272425_10010605	F070710	N/A	VRKIIDDQKHTKSLFIAESITTMNNSMIKQSFLQILQYNIRKSLRIQELFLIDREVREFNIVAIQKQDCNNNDLQSFNSAHNFFHLVKNSSSQSRTCIYINKYLRLNQXIVETAESDICLIRILTCNTDNKTQTLRLLNVYNSCSLFTTFTEKSSIISRLNELLKNDC
Ga0272425_10010609	F038484	N/A	MRSILMYIARMLSAFXKSSRIFIILLLRCNLCAEIALMFATHSLYFSHRXFHXSLXYCVITMLSFVEIIVKKKVCRLRLNCIFASSXMKTFRSTIFLMTSEQEMTRLTFVKXAHINSHAYLISCVQSLTQLCSVILFCSMFKXTCSKLMYVSVFKVSMFTLLNTSATXCKTXFXSVSSLCSLLNSSSFLSHXCQTDASNAISDLTTAKYTCLAFVKIASYVKTSRXLSVSILVTXFISIYXRCMSHCSFMFSCIFKTRTSDFDLITELSICMLVIMLNLFDFLVKCVSSYFSDANVVS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272425_1001060

Overview

Ecosystem & Geography

Associated Families

Sequences