Scaffold Ga0272425_1001023

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1001023
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55710
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (22.41%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003820	Metagenome	466	Y
F008169	Metagenome	337	Y
F009377	Metagenome	318	Y
F011463	Metagenome	290	Y
F017941	Metagenome	237	Y
F021452	Metagenome	218	Y
F025887	Metagenome	199	Y
F044226	Metagenome	154	Y
F048017	Metagenome	148	Y
F061402	Metagenome	131	Y
F074203	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100102314	F074203	N/A	MFSHSFTEEYSEEFXNCFSQISDADSLKSRMKSSSAASFIHEDDESFAEMIILFVFYEIXKARSLVLDEETDQLYELNKQQEDEIKELKTRLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNSIXKNXYGKIQNKLEINVDLFSNKXVKLSYIHSRLFNDAAEITQARCEQDCVNLYKIIDDLLKKLTQLFNDLNKKVNFRREYYNLIQRSKKFSEFYTQFQ
Ga0272425_100102319	F048017	N/A	MFKSGKMNTKVDALIRMFLANVSESTQRLEDYFQTILTFDRVNVLFIESKAKLYQRVXMINQTDELCSKYRQAMNENKLKFHITKLKNCEIIDDVLFKKDLLXISENMHTKLLQEVHDQSSISHFDNKXIINLVQRFYY
Ga0272425_100102320	F044226	N/A	MKFNDNFNIFSITLMILFYFNKEFHSRMSFNSDMTDYKTTCERLEARKADDIVI
Ga0272425_100102321	F011463	N/A	MKELLNFNRQQLKKTKLIIEVQINKHKRDITYKVDDXVXLFFRNVKTTRLCKDLKDKQLDLYQITAKVSIFYHLHLSVSMKHLHSMFSLKLLQSYSEDFLSEQNSESLRSITIKDDEHXEINDILNFRCYQGXIQYKVKXKDLDRNNEXYYVDKEKFNDSEKVLNEFHKLYSNKLR
Ga0272425_100102323	F009377	AGAAG	MNVSSDTEEKNTNALLFDHEMIKISISIELNAXINAHEADNIVVFIKYICQQHDIEIKIHNDMIQMLENVNEINIMLKATQTHLQKEMRNKNVIIHHLKTASSXQSTLISEDXSLKSIKLLNSLLFEDSLQNVNNXLSRMXNKLKINKNHFFIKELKIVYIESRVNEAAIKHIASXMKDTFLNFFLEVEEVLSIINKMYDDFNHCHMT
Ga0272425_100102325	F021452	N/A	MSDDSFDFKSFTVDVILSSLEKIFRFLALIDTEVTDMIFIDESLMLKLCECFNIQSILLLKSKSIXLYDEISDXKSITHALYTLIMIQEHKNEMMFFVKM
Ga0272425_100102328	F061402	N/A	MQDDXFVXLFMTEFVDNNAILSSIEQSMFFLNKNFHSCMSFDLNSTDYEITQARIEVREYIQTHEMITSID
Ga0272425_10010233	F017941	N/A	MKIVDLKKNNDQSIYKQILETNEIDENCTLLREAIARDEA
Ga0272425_100102332	F025887	N/A	MFDDSFDFKSFTIDVILSNLEKIFRFLALINIKVIDMTFIDESLMSELCECFNIQSISLLKSKSIQLYDEISD
Ga0272425_100102335	F008169	N/A	MSDHSLTEERFEEFRNHFSQISDADSSKSRTKSSSAASFIHEDDKSFAETIILLVFYKIXKTRSLALDEETDRLYELNKQQEDEIKELKTRLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNSTXENXYGKIQNKLEINVDLFSNEXVKLSYIHSRLFDDAAEITQAKRERDCVNLYKIVNDLLKELAQLFDDSNKKVNFRRKYYNLIQEFKKFSEFYTQFQRLFFYLDYHKKQLIVDLKDKIHSRLRFIXIDQLVQPDFLKEIHFYLIHLNNDQRVIQEIKNKIKRVNDLSKTIFHRVTIVTQSVDHSKSDQLKSRDAILTSVKEADILVESCFICHKSDHSSKECLNRPTRINAVNNEYDRFDFNSNFDSKN
Ga0272425_10010235	F003820	N/A	MKLFNYLEYNDRTLMNDLQNKINNRLQNALLICLKDFTTLHRLKSFLQSMNNRQXVNYQLRSERCMIIVKVIVASEKRVTSLSAVMTLIIKYVKSTIFSTSESVRSFIICYIYKILNHLSKNCSQNKINTSASXAFIFRLHEIIISKNKENEKMSSFKDSEAKN