Scaffold Ga0272425_1000986

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000986
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57333
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (8.06%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F010214	Metagenome	306	Y
F035571	Metagenome	171	Y
F038484	Metagenome	165	Y
F070711	Metagenome	122	Y
F104134	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100098610	F104134	N/A	MSSLLSLQSDMIRFLXSVNTFAIFCRICSINFFCIFFISLLFIILIMTSHFLXSDDELSLKCCFLIAISSLVTFVHDVIFVKRCVFFCVCNCLLSSXTDIFSFCTFFVMNAFXFAXCFSSESSXKCXISFNAISFHEXSLLFSFSNVDIFISRSIILVMFSSSSREHFNFASLFSYNESTSLAIIFESALLQFMQFIIVQSSSKFTLSCL
Ga0272425_100098616	F038484	N/A	MHSILMCIARVLSAFXKSSRIFIILLLRCNLCAEIVLTSATRSLYFFHHXFHXSLXYCMIAMLSLVEIIVKKRVHHLHLDCIFTSSXMKTFRSTIFFMTSEREMTXLTFVKXVHINSHAYLISYVQLLTQLCSMILFYNMFKXTCSKLMYVSVFKVSMFTLLNAFATXCRVXFXSVSSLHSLLNSSFFLSRXCQTDASNAISDLTTAKYTCLAFVKIASHVKTSRXLSVSILMTXFIFICQRCASHCSFMFSCIFKTCTSDFNLITEFSICMLIIMLNLFDFLVKCVSSYFSDANVVSXMQAHFAQTSYALLNVLQISSVNLL
Ga0272425_100098620	F010214	N/A	MXCLSKLLMKVSVLFDYDASSLLCFSLMIFYTMMFXFNLXFKDERHFLCIHNAHDCNICRAVFSYSMIVIHXAEKYVMKERCTRXEDRVXLYXVTLFFSXFDLCHVNVEXIVSINMQLQSFDVXLXLMKENVFXSFSXALDFSCE
Ga0272425_100098629	F038484	N/A	MRLILMCIARVLSAFXRSSCIFIILLLRCNLCAEIVLTSATRSLYFFHRXFHXSLXYCIIAMLSLVEIIVKKKMHRLHLNCIFASSXMKTFRSTIFLMTSEREMTRLTFVKRMCISLHACLISCVRSLTRLCSMILFCSMFRXTCSELMYVSVSRVSMFTLLNASVTXHRVXFXSVFSLHSLLNSSFFLSCXCQTDASNVISDLTTAEYTCLAYVKIASHVKISRXLSVSILVTXFVFICRRCASYCSFVFSCTSRTRTFDFNLITELSICMLVIMLNLFDFLVKCVSSYFSDANVASXVQAHFAQTLCALLSVLQISSVNLS
Ga0272425_100098641	F000597	N/A	MKDVLISSIINILNNSFASESLTIECVLFSDEISYSLKSLIDIEAADYSFINEVIMQIVYDQLQIESLTLIKAKSIQEFNDHYAKKLIIYVIYLNLTVQDHTIETAFMLIIQLS
Ga0272425_100098648	F010214	GAG	MRVSVLFDYDASSLLCSSLTIFYTTMFRFDFRFKDERCFLCIHDAHDCNVHKAVFSYSMIVIHXAEKYVMKERCTRXEDKVXLYXVILFFSXFDLCHVDVEXIVSINMQSQSFDVXLXSMKENAFXSFSXALNFSRE
Ga0272425_10009865	F035571	N/A	MFTLLNAFATXCRVXFXSVSSLHSLLNSSSFLSRXCQTDASNAISDLTTAEYTCLVFVKITSHMKTSRXLSVSILVTXFIFICXRCAFHCSFVFSYISKTCTSDFDLIIELSIYMLVIMLNLFDFLVKCVSSYFSDANVASXVQTHFAQTSCALLSVLQISSMNLS
Ga0272425_100098650	F010214	GAG	MRVSVLFDYDALSLLCSSLMIFYTMMSRFDLQFKDEKRFLCTRDARDCNVRRAVFSYSMIVIHXAKKYVMKERCIXXEDKVXLYXVTLFFSXFDLCHVDVEXIVSINMQSQSFDVXLXLMKENAFXLFSXALDFSRE
Ga0272425_100098651	F070711	N/A	MKDVLISSTTSMLNDSFASESLTTKYILFNNKISYSLKSLIDIEAADYSFIDEVIMQIVC
Ga0272425_10009869	F010214	N/A	MXRSSKLLMKVSVLFDYDASSLLCSSLTIFYTTMFRFNSRFKDERCFLCTHDACDCNVRRAVFSYSMIVIHXAEKYVMKERCTXXEDKVXLYXVILFFSXFDLCHVDVEXTVSISVQSQSFDVXFXSMKENAFXSFS